miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 190214 0.67 0.86156
Target:  5'- cGGCGcggucguccGGGACGGccaCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC---------UCCUGCUccgGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 45384 0.67 0.86156
Target:  5'- -aCGAGGACGcGGGCCGgg-ACUGUc- -3'
miRNA:   3'- ccGCUCCUGC-UCCGGCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 10160 0.68 0.830599
Target:  5'- cGGCGAGGcACGGGGgCCGcCU-CUcGCg- -3'
miRNA:   3'- -CCGCUCC-UGCUCC-GGCaGAuGA-CGaa -5'
8953 5' -57.7 NC_002512.2 + 213518 0.68 0.830599
Target:  5'- gGGCGucguccGGGuCGGGGUgcccucggagCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC------UCCuGCUCCG----------GCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 123029 0.68 0.82242
Target:  5'- cGCGAcGAgGAGGUCGUCgagaucgACUGCa- -3'
miRNA:   3'- cCGCUcCUgCUCCGGCAGa------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 81940 0.68 0.814079
Target:  5'- cGGCGAGGGCGgagGGGCCGgc-GC-GCg- -3'
miRNA:   3'- -CCGCUCCUGC---UCCGGCagaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 212166 0.68 0.814079
Target:  5'- cGGCG-GGACGgcuGGGCCGUCcagGC-GCg- -3'
miRNA:   3'- -CCGCuCCUGC---UCCGGCAGa--UGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 128680 0.68 0.814079
Target:  5'- cGGC--GGACGGGGCCGUCgugAUcgGCa- -3'
miRNA:   3'- -CCGcuCCUGCUCCGGCAGa--UGa-CGaa -5'
8953 5' -57.7 NC_002512.2 + 90568 0.68 0.796941
Target:  5'- gGGCGAGGGCGAcGGCCccgGUCUccuucccccgggGCggGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA------------UGa-CGaa -5'
8953 5' -57.7 NC_002512.2 + 106943 0.68 0.796941
Target:  5'- cGGUGAaGACGAGGCCGaagUUGCaGCg- -3'
miRNA:   3'- -CCGCUcCUGCUCCGGCa--GAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 167154 0.68 0.796941
Target:  5'- cGGCGuGccccGCGAGGCCGUCgaccgcgacgcGCUGCg- -3'
miRNA:   3'- -CCGCuCc---UGCUCCGGCAGa----------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 95700 0.68 0.795195
Target:  5'- cGGCGGGGACGggGGGCCGggaggggaagACgGCUc -3'
miRNA:   3'- -CCGCUCCUGC--UCCGGCaga-------UGaCGAa -5'
8953 5' -57.7 NC_002512.2 + 88620 0.69 0.788159
Target:  5'- cGGCGucGGGACGAacguGGUCGUCgcGCUGUUc -3'
miRNA:   3'- -CCGC--UCCUGCU----CCGGCAGa-UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 133796 0.69 0.788159
Target:  5'- cGGCGGGGACGAcGGUCG-CgccgGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGGCaGa---UgACGaa -5'
8953 5' -57.7 NC_002512.2 + 102128 0.69 0.779245
Target:  5'- cGGagGGGGACccuGGCCGUCUACgGCc- -3'
miRNA:   3'- -CCg-CUCCUGcu-CCGGCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 191316 0.69 0.779245
Target:  5'- cGGCGGGGuCaAGGUgGUCUGCgGCg- -3'
miRNA:   3'- -CCGCUCCuGcUCCGgCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 46377 0.69 0.779245
Target:  5'- aGGCGAGGACGGccucccccucgcGGCCGUagGCgGCc- -3'
miRNA:   3'- -CCGCUCCUGCU------------CCGGCAgaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 200492 0.69 0.767474
Target:  5'- uGCGAGGGCGgcguccuccgaccgGGGCuCGUCcucacGCUGCUg -3'
miRNA:   3'- cCGCUCCUGC--------------UCCG-GCAGa----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 181410 0.69 0.751797
Target:  5'- cGcCGGGGACGcguucaggauGGCCGUCaGCUGCg- -3'
miRNA:   3'- cC-GCUCCUGCu---------CCGGCAGaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 126913 0.7 0.742439
Target:  5'- cGGCGGGGG-GAGGCCGg--GCUgGCg- -3'
miRNA:   3'- -CCGCUCCUgCUCCGGCagaUGA-CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.