Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8954 | 3' | -60.6 | NC_002512.2 | + | 214010 | 1.08 | 0.002437 |
Target: 5'- gCGCGACGCCCGGAGGCGAUAGGUGCGu -3' miRNA: 3'- -GCGCUGCGGGCCUCCGCUAUCCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 25610 | 0.88 | 0.056665 |
Target: 5'- uCGCGcACGUCCaGGAGGCGGUAGGUGUGg -3' miRNA: 3'- -GCGC-UGCGGG-CCUCCGCUAUCCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 80699 | 0.76 | 0.302665 |
Target: 5'- aGCGGCGUCCgGGGGGCGA-GGGcGCGc -3' miRNA: 3'- gCGCUGCGGG-CCUCCGCUaUCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 80925 | 0.75 | 0.329699 |
Target: 5'- gCGCgGGCGCCCucccGGCGGUAGGUGCc -3' miRNA: 3'- -GCG-CUGCGGGccu-CCGCUAUCCACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 126484 | 0.75 | 0.329699 |
Target: 5'- uCGCGuCGCCCGGAuccccGGCGuUGGGcGCGa -3' miRNA: 3'- -GCGCuGCGGGCCU-----CCGCuAUCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 189702 | 0.75 | 0.365936 |
Target: 5'- uCGuCGACGUCCGGgggaugucgGGGCGGUGGGgagGCa -3' miRNA: 3'- -GC-GCUGCGGGCC---------UCCGCUAUCCa--CGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 108323 | 0.74 | 0.396842 |
Target: 5'- gGCGGCGCgCGGcGGGCGGUcGGcGCGg -3' miRNA: 3'- gCGCUGCGgGCC-UCCGCUAuCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 150329 | 0.74 | 0.396842 |
Target: 5'- gGCGAggaCGCCgCGGcGGUGAUGGaGUGCGa -3' miRNA: 3'- gCGCU---GCGG-GCCuCCGCUAUC-CACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 139267 | 0.74 | 0.4121 |
Target: 5'- uCGCGcCGCCCGGcgcgcggGGGCGAaGGGggGCGc -3' miRNA: 3'- -GCGCuGCGGGCC-------UCCGCUaUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 121903 | 0.73 | 0.421097 |
Target: 5'- gGCGACGCgCGGGGaGCGAgcGGgacgagGCGg -3' miRNA: 3'- gCGCUGCGgGCCUC-CGCUauCCa-----CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 72 | 0.73 | 0.429379 |
Target: 5'- uCGCgGGCGCgaGGAGGCGAgAGGcgGCGg -3' miRNA: 3'- -GCG-CUGCGggCCUCCGCUaUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 229476 | 0.73 | 0.429379 |
Target: 5'- uCGCgGGCGCgaGGAGGCGAgAGGcgGCGg -3' miRNA: 3'- -GCG-CUGCGggCCUCCGCUaUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 16930 | 0.73 | 0.437755 |
Target: 5'- -uCGAC-CCCGGAGGCGccGUAGG-GCGa -3' miRNA: 3'- gcGCUGcGGGCCUCCGC--UAUCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 122003 | 0.73 | 0.437755 |
Target: 5'- -uCGGCGCCCGGAGGgGccggAGGcgGCGg -3' miRNA: 3'- gcGCUGCGGGCCUCCgCua--UCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 142061 | 0.73 | 0.445373 |
Target: 5'- -cCGACGCCCGGccGGGgGAUcgcucggGGGUGCa -3' miRNA: 3'- gcGCUGCGGGCC--UCCgCUA-------UCCACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 17872 | 0.72 | 0.472166 |
Target: 5'- uCGCGcaGgGCCCGGGGGacguGAUAGGcgGCGg -3' miRNA: 3'- -GCGC--UgCGGGCCUCCg---CUAUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 74916 | 0.72 | 0.517005 |
Target: 5'- aCGCGGagGCCCGGAGGCGGaucgcGGaccGCGg -3' miRNA: 3'- -GCGCUg-CGGGCCUCCGCUau---CCa--CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 4571 | 0.72 | 0.517005 |
Target: 5'- uGCGGCGUCUGG-GGCGGcggAGGagGCGg -3' miRNA: 3'- gCGCUGCGGGCCuCCGCUa--UCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 74639 | 0.71 | 0.526182 |
Target: 5'- gCGCGACgGCCCGGGGGaGAUcGGGggaGCu -3' miRNA: 3'- -GCGCUG-CGGGCCUCCgCUA-UCCa--CGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 137093 | 0.71 | 0.53542 |
Target: 5'- cCGCGguguGCGCCCaGGcGCGcgGGGUGCGa -3' miRNA: 3'- -GCGC----UGCGGGcCUcCGCuaUCCACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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