miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 140926 0.7 0.630068
Target:  5'- aCGCGGCgGCUCGGgacggcgacgAGGCGGaAGGgggGCGg -3'
miRNA:   3'- -GCGCUG-CGGGCC----------UCCGCUaUCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 4571 0.72 0.517005
Target:  5'- uGCGGCGUCUGG-GGCGGcggAGGagGCGg -3'
miRNA:   3'- gCGCUGCGGGCCuCCGCUa--UCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 74916 0.72 0.517005
Target:  5'- aCGCGGagGCCCGGAGGCGGaucgcGGaccGCGg -3'
miRNA:   3'- -GCGCUg-CGGGCCUCCGCUau---CCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 74639 0.71 0.526182
Target:  5'- gCGCGACgGCCCGGGGGaGAUcGGGggaGCu -3'
miRNA:   3'- -GCGCUG-CGGGCCUCCgCUA-UCCa--CGc -5'
8954 3' -60.6 NC_002512.2 + 137093 0.71 0.53542
Target:  5'- cCGCGguguGCGCCCaGGcGCGcgGGGUGCGa -3'
miRNA:   3'- -GCGC----UGCGGGcCUcCGCuaUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 130152 0.71 0.572886
Target:  5'- cCGCGGgGCCCGGcGGCGGgccGGcccGCGa -3'
miRNA:   3'- -GCGCUgCGGGCCuCCGCUau-CCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 152460 0.7 0.59186
Target:  5'- gCGCGGCGUUgGGAGGCGucccGGGUccugugacGCGa -3'
miRNA:   3'- -GCGCUGCGGgCCUCCGCua--UCCA--------CGC- -5'
8954 3' -60.6 NC_002512.2 + 90121 0.7 0.620498
Target:  5'- uCGCgGGCGCCCGGuGcGCGA-GGGccGCGg -3'
miRNA:   3'- -GCG-CUGCGGGCCuC-CGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 97378 0.7 0.620498
Target:  5'- cCGCGGCGgCCGGAGaCGGgggcGGGcGCGa -3'
miRNA:   3'- -GCGCUGCgGGCCUCcGCUa---UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 17872 0.72 0.472166
Target:  5'- uCGCGcaGgGCCCGGGGGacguGAUAGGcgGCGg -3'
miRNA:   3'- -GCGC--UgCGGGCCUCCg---CUAUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 142061 0.73 0.445373
Target:  5'- -cCGACGCCCGGccGGGgGAUcgcucggGGGUGCa -3'
miRNA:   3'- gcGCUGCGGGCC--UCCgCUA-------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 16930 0.73 0.437755
Target:  5'- -uCGAC-CCCGGAGGCGccGUAGG-GCGa -3'
miRNA:   3'- gcGCUGcGGGCCUCCGC--UAUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 80699 0.76 0.302665
Target:  5'- aGCGGCGUCCgGGGGGCGA-GGGcGCGc -3'
miRNA:   3'- gCGCUGCGGG-CCUCCGCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 80925 0.75 0.329699
Target:  5'- gCGCgGGCGCCCucccGGCGGUAGGUGCc -3'
miRNA:   3'- -GCG-CUGCGGGccu-CCGCUAUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 108323 0.74 0.396842
Target:  5'- gGCGGCGCgCGGcGGGCGGUcGGcGCGg -3'
miRNA:   3'- gCGCUGCGgGCC-UCCGCUAuCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 139267 0.74 0.4121
Target:  5'- uCGCGcCGCCCGGcgcgcggGGGCGAaGGGggGCGc -3'
miRNA:   3'- -GCGCuGCGGGCC-------UCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 121903 0.73 0.421097
Target:  5'- gGCGACGCgCGGGGaGCGAgcGGgacgagGCGg -3'
miRNA:   3'- gCGCUGCGgGCCUC-CGCUauCCa-----CGC- -5'
8954 3' -60.6 NC_002512.2 + 72 0.73 0.429379
Target:  5'- uCGCgGGCGCgaGGAGGCGAgAGGcgGCGg -3'
miRNA:   3'- -GCG-CUGCGggCCUCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 229476 0.73 0.429379
Target:  5'- uCGCgGGCGCgaGGAGGCGAgAGGcgGCGg -3'
miRNA:   3'- -GCG-CUGCGggCCUCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 122003 0.73 0.437755
Target:  5'- -uCGGCGCCCGGAGGgGccggAGGcgGCGg -3'
miRNA:   3'- gcGCUGCGGGCCUCCgCua--UCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.