Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8954 | 3' | -60.6 | NC_002512.2 | + | 104281 | 0.66 | 0.828412 |
Target: 5'- gGCGucuuucucGCGUCCGGcGGCGggAGGcUGCc -3' miRNA: 3'- gCGC--------UGCGGGCCuCCGCuaUCC-ACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 129830 | 0.66 | 0.828412 |
Target: 5'- cCGCGGCcCCCgucgcgauGGAGGCGG-AGGcggagGCGg -3' miRNA: 3'- -GCGCUGcGGG--------CCUCCGCUaUCCa----CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 116725 | 0.66 | 0.820465 |
Target: 5'- uCGCGuccCGCCCGGccGCGGcgAGGccgGCGc -3' miRNA: 3'- -GCGCu--GCGGGCCucCGCUa-UCCa--CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 120609 | 0.66 | 0.820465 |
Target: 5'- aGCgGGCGCCgGuGAGaGCGggAGGcgGCGg -3' miRNA: 3'- gCG-CUGCGGgC-CUC-CGCuaUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 219413 | 0.66 | 0.820465 |
Target: 5'- cCGCGACGCCCacgcccGGGGCGGcg---GCGg -3' miRNA: 3'- -GCGCUGCGGGc-----CUCCGCUauccaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 208674 | 0.66 | 0.820465 |
Target: 5'- gGCGGCGuCCCGGGGGCcgcugucccugGAcGGGUa-- -3' miRNA: 3'- gCGCUGC-GGGCCUCCG-----------CUaUCCAcgc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 195299 | 0.66 | 0.820465 |
Target: 5'- gGcCGGCGCCgaaGGGcGCGAgcucAGGUGCGc -3' miRNA: 3'- gC-GCUGCGGg--CCUcCGCUa---UCCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 32836 | 0.66 | 0.820465 |
Target: 5'- gGUGGUGCCCaggcugcaGGAGGUGAcggugccgUGGGUGCc -3' miRNA: 3'- gCGCUGCGGG--------CCUCCGCU--------AUCCACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 108807 | 0.66 | 0.820465 |
Target: 5'- uGCgGGCGCuguuCCGcGAGGCGugcgAGGUGUa -3' miRNA: 3'- gCG-CUGCG----GGC-CUCCGCua--UCCACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 2830 | 0.66 | 0.820465 |
Target: 5'- gCGCGG-GCCCGGAcgacGGCGGgcAGcUGCGg -3' miRNA: 3'- -GCGCUgCGGGCCU----CCGCUa-UCcACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 106183 | 0.66 | 0.820465 |
Target: 5'- gGCGACGCCgGGuccuucggguuGGCGAUcauccGGUccGCGg -3' miRNA: 3'- gCGCUGCGGgCCu----------CCGCUAu----CCA--CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 196192 | 0.66 | 0.820465 |
Target: 5'- gGCGACGgCCGGGucccuGGCGAgccuccGGcGCGu -3' miRNA: 3'- gCGCUGCgGGCCU-----CCGCUau----CCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 180016 | 0.66 | 0.819662 |
Target: 5'- aGCGggacucgaucACGCUCGGgaucuccgaucccAGGCGGUgcGGGUGCc -3' miRNA: 3'- gCGC----------UGCGGGCC-------------UCCGCUA--UCCACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 201653 | 0.66 | 0.819662 |
Target: 5'- gCGCGACGgcCCCGGccGCGGUuccuucuucggcgAGG-GCGg -3' miRNA: 3'- -GCGCUGC--GGGCCucCGCUA-------------UCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 186738 | 0.66 | 0.819662 |
Target: 5'- gGUG-UGCCCuGGGGCGAUcguugaaGGGUGgGg -3' miRNA: 3'- gCGCuGCGGGcCUCCGCUA-------UCCACgC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 131686 | 0.66 | 0.81237 |
Target: 5'- gGCGGugaGCCCGGAGcGCaGGUAG-UGCu -3' miRNA: 3'- gCGCUg--CGGGCCUC-CG-CUAUCcACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 116198 | 0.66 | 0.81237 |
Target: 5'- uGCGG-GCCaGGcAGGCGGUcgagcugacgaAGGUGCGc -3' miRNA: 3'- gCGCUgCGGgCC-UCCGCUA-----------UCCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 13726 | 0.66 | 0.81237 |
Target: 5'- aCGCGGgaGCCUGaGGGGCGcgAcgccGGUGUGa -3' miRNA: 3'- -GCGCUg-CGGGC-CUCCGCuaU----CCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 195292 | 0.66 | 0.810733 |
Target: 5'- aCG-GACGCCaucaGGAGGCaacaugacuGGUGCGu -3' miRNA: 3'- -GCgCUGCGGg---CCUCCGcuau-----CCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 227225 | 0.66 | 0.80413 |
Target: 5'- gGCGGCGgaCCgGGAGGCGcgGcGGacggGCGg -3' miRNA: 3'- gCGCUGC--GGgCCUCCGCuaU-CCa---CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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