miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 131717 0.69 0.7209
Target:  5'- gGUCgccgCGCCCGUCcagacgcggcgACCGCCGgggCgggcgGCCg -3'
miRNA:   3'- -UAGa---GCGGGCAG-----------UGGCGGCa--Ga----UGGa -5'
8954 5' -59.4 NC_002512.2 + 119041 0.7 0.614435
Target:  5'- cGUCguggGCCUGuUCGCCGCgcaCGUCUGCCUg -3'
miRNA:   3'- -UAGag--CGGGC-AGUGGCG---GCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 82923 0.7 0.65932
Target:  5'- aGUCUCGgCCGcgGCCGCCGUCgucgcgcuucacgGCCa -3'
miRNA:   3'- -UAGAGCgGGCagUGGCGGCAGa------------UGGa -5'
8954 5' -59.4 NC_002512.2 + 22277 0.7 0.663213
Target:  5'- -aCUCGCCgccgcagcaGcCGCCGCCGUCgcagGCCa -3'
miRNA:   3'- uaGAGCGGg--------CaGUGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 2360 0.69 0.672929
Target:  5'- cUCcCGCCCGUcCGCCGCCGgacUCUcCCc -3'
miRNA:   3'- uAGaGCGGGCA-GUGGCGGC---AGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 82183 0.69 0.672929
Target:  5'- gGUCgagaGCCCGU--CCGCCGUCggGCCg -3'
miRNA:   3'- -UAGag--CGGGCAguGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 81411 0.69 0.692262
Target:  5'- uUCUCGUCC-UCcCCGCCGUCgcgGCUc -3'
miRNA:   3'- uAGAGCGGGcAGuGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 80165 0.69 0.692262
Target:  5'- -cCUCG-CUGUCGCCGUCGUCgcugcUGCCg -3'
miRNA:   3'- uaGAGCgGGCAGUGGCGGCAG-----AUGGa -5'
8954 5' -59.4 NC_002512.2 + 17308 0.69 0.692262
Target:  5'- --aUCGCgUCGUCGCCGCCGUCg---- -3'
miRNA:   3'- uagAGCG-GGCAGUGGCGGCAGaugga -5'
8954 5' -59.4 NC_002512.2 + 107207 0.71 0.585258
Target:  5'- -aCUCGCCCGggccCcUCGCCGUC-ACCUg -3'
miRNA:   3'- uaGAGCGGGCa---GuGGCGGCAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 59051 0.71 0.585258
Target:  5'- ---aCGUCCGggUCGCCGCCG-CUGCCg -3'
miRNA:   3'- uagaGCGGGC--AGUGGCGGCaGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 154604 0.71 0.556357
Target:  5'- cAUCgUCGCcgCCGcCGCCGCCGUCgccGCCa -3'
miRNA:   3'- -UAG-AGCG--GGCaGUGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 1107 0.74 0.420626
Target:  5'- -cCUCuCCCGUCuCCGCCGUCUcggucGCCUc -3'
miRNA:   3'- uaGAGcGGGCAGuGGCGGCAGA-----UGGA- -5'
8954 5' -59.4 NC_002512.2 + 39991 0.73 0.463812
Target:  5'- -cCUCGCcgCCGUCcucgccGCCGCCGUCUccGCCg -3'
miRNA:   3'- uaGAGCG--GGCAG------UGGCGGCAGA--UGGa -5'
8954 5' -59.4 NC_002512.2 + 76762 0.73 0.481725
Target:  5'- --aUCGCCCGUC-CCGCCcGUCgccACCg -3'
miRNA:   3'- uagAGCGGGCAGuGGCGG-CAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 38618 0.72 0.527883
Target:  5'- -cCUC-CCCGUCGCCGCCuccccgcccucUCUACCUg -3'
miRNA:   3'- uaGAGcGGGCAGUGGCGGc----------AGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 34867 0.72 0.537319
Target:  5'- uUCgUCGCCguCGUCGCCGCCGcCgggACCg -3'
miRNA:   3'- uAG-AGCGG--GCAGUGGCGGCaGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 131262 0.72 0.537319
Target:  5'- cGUCUCGCUCGUCACgGCCaucCUGCg- -3'
miRNA:   3'- -UAGAGCGGGCAGUGgCGGca-GAUGga -5'
8954 5' -59.4 NC_002512.2 + 112893 0.72 0.546812
Target:  5'- uUCUCGUCgGUCGCCGC-GUCgcggACCa -3'
miRNA:   3'- uAGAGCGGgCAGUGGCGgCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 1659 0.71 0.556357
Target:  5'- -gUUCGCCCuUC-CCGCCGUCUcGCCc -3'
miRNA:   3'- uaGAGCGGGcAGuGGCGGCAGA-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.