miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 119041 0.7 0.614435
Target:  5'- cGUCguggGCCUGuUCGCCGCgcaCGUCUGCCUg -3'
miRNA:   3'- -UAGag--CGGGC-AGUGGCG---GCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 82923 0.7 0.65932
Target:  5'- aGUCUCGgCCGcgGCCGCCGUCgucgcgcuucacgGCCa -3'
miRNA:   3'- -UAGAGCgGGCagUGGCGGCAGa------------UGGa -5'
8954 5' -59.4 NC_002512.2 + 112373 0.68 0.748915
Target:  5'- uGUC-CGUCC-UCACCGCCGUCaGCg- -3'
miRNA:   3'- -UAGaGCGGGcAGUGGCGGCAGaUGga -5'
8954 5' -59.4 NC_002512.2 + 105614 0.68 0.739659
Target:  5'- ---aCGCCCGgguccgaCGCCGCCGUCgggugcACCg -3'
miRNA:   3'- uagaGCGGGCa------GUGGCGGCAGa-----UGGa -5'
8954 5' -59.4 NC_002512.2 + 59092 0.68 0.739659
Target:  5'- -gCUC-CCC-UCGCCGCCGUCgucgcGCCg -3'
miRNA:   3'- uaGAGcGGGcAGUGGCGGCAGa----UGGa -5'
8954 5' -59.4 NC_002512.2 + 189254 0.68 0.730319
Target:  5'- cUCguaCGCUCGUCACCGCCGcguugacgcUCU-CCa -3'
miRNA:   3'- uAGa--GCGGGCAGUGGCGGC---------AGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 131717 0.69 0.7209
Target:  5'- gGUCgccgCGCCCGUCcagacgcggcgACCGCCGgggCgggcgGCCg -3'
miRNA:   3'- -UAGa---GCGGGCAG-----------UGGCGGCa--Ga----UGGa -5'
8954 5' -59.4 NC_002512.2 + 17308 0.69 0.692262
Target:  5'- --aUCGCgUCGUCGCCGCCGUCg---- -3'
miRNA:   3'- uagAGCG-GGCAGUGGCGGCAGaugga -5'
8954 5' -59.4 NC_002512.2 + 80165 0.69 0.692262
Target:  5'- -cCUCG-CUGUCGCCGUCGUCgcugcUGCCg -3'
miRNA:   3'- uaGAGCgGGCAGUGGCGGCAG-----AUGGa -5'
8954 5' -59.4 NC_002512.2 + 81411 0.69 0.692262
Target:  5'- uUCUCGUCC-UCcCCGCCGUCgcgGCUc -3'
miRNA:   3'- uAGAGCGGGcAGuGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 82183 0.69 0.672929
Target:  5'- gGUCgagaGCCCGU--CCGCCGUCggGCCg -3'
miRNA:   3'- -UAGag--CGGGCAguGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 2360 0.69 0.672929
Target:  5'- cUCcCGCCCGUcCGCCGCCGgacUCUcCCc -3'
miRNA:   3'- uAGaGCGGGCA-GUGGCGGC---AGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 22277 0.7 0.663213
Target:  5'- -aCUCGCCgccgcagcaGcCGCCGCCGUCgcagGCCa -3'
miRNA:   3'- uaGAGCGGg--------CaGUGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 203187 0.66 0.835041
Target:  5'- ---aCGCCagccagGUCACCGCCagcacggcguacGUCUGCCg -3'
miRNA:   3'- uagaGCGGg-----CAGUGGCGG------------CAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 218606 0.66 0.842846
Target:  5'- gGUCUCGCCCGcggacUCGaaggaCGCgCGUCgggACCc -3'
miRNA:   3'- -UAGAGCGGGC-----AGUg----GCG-GCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 206543 0.66 0.850477
Target:  5'- -gCUCGCCgcacuCGUaCACCGCCGgcgGCCc -3'
miRNA:   3'- uaGAGCGG-----GCA-GUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 1693 0.66 0.857928
Target:  5'- uAUC-CGCCCGUCcCCGCU-UCU-CCUg -3'
miRNA:   3'- -UAGaGCGGGCAGuGGCGGcAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 99619 0.66 0.857928
Target:  5'- ---gCGCUCGUCGCgGUCGUCgcCCUc -3'
miRNA:   3'- uagaGCGGGCAGUGgCGGCAGauGGA- -5'
8954 5' -59.4 NC_002512.2 + 56152 0.66 0.865193
Target:  5'- uGUCUCaCCUGUC-CCGuuGUCUGUCUc -3'
miRNA:   3'- -UAGAGcGGGCAGuGGCggCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 214044 1.05 0.004233
Target:  5'- cAUCUCGCCCGUCACCGCCGUCUACCUc -3'
miRNA:   3'- -UAGAGCGGGCAGUGGCGGCAGAUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.