miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 213409 1.11 0.00386
Target:  5'- cUGCGCCAUACGCUCUGUCGUCUCCGCc -3'
miRNA:   3'- -ACGCGGUAUGCGAGACAGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177128 0.81 0.299111
Target:  5'- gUGCGCCAgcagggcccgcGCGUUCUGcugcagCGUCUCCGCg -3'
miRNA:   3'- -ACGCGGUa----------UGCGAGACa-----GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 20728 0.77 0.475181
Target:  5'- cGCGCCGUGCcgacgacgacguGCUCgccGUCGUCUCC-Ca -3'
miRNA:   3'- aCGCGGUAUG------------CGAGa--CAGCAGAGGcG- -5'
8955 5' -55.7 NC_002512.2 + 24362 0.75 0.541229
Target:  5'- cUGcCGCUguAUGCGCUCgaagucGUCGUCcUCCGCg -3'
miRNA:   3'- -AC-GCGG--UAUGCGAGa-----CAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 74536 0.75 0.569513
Target:  5'- aGCGCCGcucguguUACGCgUCUGUCugGUCcgCCGCg -3'
miRNA:   3'- aCGCGGU-------AUGCG-AGACAG--CAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 189787 0.75 0.590221
Target:  5'- -cCGCCGUACgagGCUCUGUC-UCUCCGa -3'
miRNA:   3'- acGCGGUAUG---CGAGACAGcAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 189063 0.74 0.639924
Target:  5'- aGCgGCCGgcgGCGCUCUcgacGgcgaGUCUCCGCg -3'
miRNA:   3'- aCG-CGGUa--UGCGAGA----Cag--CAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 129320 0.73 0.658821
Target:  5'- aGCGCCcgGCGCuUCUG-CGUCacggaccUCUGCg -3'
miRNA:   3'- aCGCGGuaUGCG-AGACaGCAG-------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 217153 0.73 0.658821
Target:  5'- uUGCGCCGcAgGCUCUccaucGUCGUCggguucaucgcccUCCGCg -3'
miRNA:   3'- -ACGCGGUaUgCGAGA-----CAGCAG-------------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 167515 0.72 0.736936
Target:  5'- gGCGCCAUGCgGCUCuccgagaUGUCGUUcgaagagCUGCg -3'
miRNA:   3'- aCGCGGUAUG-CGAG-------ACAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 122093 0.72 0.737887
Target:  5'- cGCGCCGgACGCgaggucggcgCUGaCGUCggCCGCg -3'
miRNA:   3'- aCGCGGUaUGCGa---------GACaGCAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 170501 0.72 0.747342
Target:  5'- aGCGCC--ACGCacaUGUCGcgcaUCUCCGCc -3'
miRNA:   3'- aCGCGGuaUGCGag-ACAGC----AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 108398 0.72 0.747342
Target:  5'- cGCGCCGccgaUGCuGCUgCUGcUCGUCUgCGCc -3'
miRNA:   3'- aCGCGGU----AUG-CGA-GAC-AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 137218 0.71 0.7751
Target:  5'- cGCGCCcgGCGCgggCgGcCGUCccggaUCCGCg -3'
miRNA:   3'- aCGCGGuaUGCGa--GaCaGCAG-----AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 67746 0.71 0.7751
Target:  5'- cGUGCCGgccuCGCgagCcgggGUCGUCUCCGg -3'
miRNA:   3'- aCGCGGUau--GCGa--Ga---CAGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 99279 0.71 0.784122
Target:  5'- cGCGCCGg--GCUCU-UCGUCUCCu- -3'
miRNA:   3'- aCGCGGUaugCGAGAcAGCAGAGGcg -5'
8955 5' -55.7 NC_002512.2 + 176940 0.71 0.785017
Target:  5'- cGCGCCG-ACGCcgacucguucuggaUGUCGUC-CCGCa -3'
miRNA:   3'- aCGCGGUaUGCGag------------ACAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 139969 0.71 0.793015
Target:  5'- cGCGCCAUGC-C-CUGcaUCGUCUgCGUg -3'
miRNA:   3'- aCGCGGUAUGcGaGAC--AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 177240 0.71 0.80177
Target:  5'- aGCGCC---CGCUCcGUCGcCUCCaGCu -3'
miRNA:   3'- aCGCGGuauGCGAGaCAGCaGAGG-CG- -5'
8955 5' -55.7 NC_002512.2 + 36290 0.7 0.81038
Target:  5'- cGCGUCA---GCUCcccUGUCGUCcCCGCg -3'
miRNA:   3'- aCGCGGUaugCGAG---ACAGCAGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.