miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 1153 0.67 0.928235
Target:  5'- -cCGCCGUcCGCguc--CGUCUCCGCa -3'
miRNA:   3'- acGCGGUAuGCGagacaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 1970 0.68 0.923005
Target:  5'- gGCGUCGgaggcgGCGCguc--CGUCUCCGCc -3'
miRNA:   3'- aCGCGGUa-----UGCGagacaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 2128 0.69 0.880139
Target:  5'- gGCGUCGaGCGUUCgGUCGUCgccucccCCGUc -3'
miRNA:   3'- aCGCGGUaUGCGAGaCAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 3698 0.68 0.923005
Target:  5'- cGCGCUAacgGCGCg--GcCGUCUCUGUc -3'
miRNA:   3'- aCGCGGUa--UGCGagaCaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 5685 0.7 0.818837
Target:  5'- cGUcCUAUGCGCUCgcaucGUCGUUucguUCCGCg -3'
miRNA:   3'- aCGcGGUAUGCGAGa----CAGCAG----AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 20728 0.77 0.475181
Target:  5'- cGCGCCGUGCcgacgacgacguGCUCgccGUCGUCUCC-Ca -3'
miRNA:   3'- aCGCGGUAUG------------CGAGa--CAGCAGAGGcG- -5'
8955 5' -55.7 NC_002512.2 + 24362 0.75 0.541229
Target:  5'- cUGcCGCUguAUGCGCUCgaagucGUCGUCcUCCGCg -3'
miRNA:   3'- -AC-GCGG--UAUGCGAGa-----CAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 36290 0.7 0.81038
Target:  5'- cGCGUCA---GCUCcccUGUCGUCcCCGCg -3'
miRNA:   3'- aCGCGGUaugCGAG---ACAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 38943 0.66 0.958579
Target:  5'- gGCGCCcgcGUGCGCcCggGUCuggUUCCGCu -3'
miRNA:   3'- aCGCGG---UAUGCGaGa-CAGca-GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 39994 0.68 0.923005
Target:  5'- cGcCGCCGUccuCGCcgCcGcCGUCUCCGCc -3'
miRNA:   3'- aC-GCGGUAu--GCGa-GaCaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 45265 0.67 0.938018
Target:  5'- gGcCGCCGgcgggGCGCUCgcgcUCGUCU-CGCg -3'
miRNA:   3'- aC-GCGGUa----UGCGAGac--AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 56722 0.67 0.946902
Target:  5'- gGUGCUGUagaugACGCUCuucuccUGUCGaUCUCUGUa -3'
miRNA:   3'- aCGCGGUA-----UGCGAG------ACAGC-AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 67746 0.71 0.7751
Target:  5'- cGUGCCGgccuCGCgagCcgggGUCGUCUCCGg -3'
miRNA:   3'- aCGCGGUau--GCGa--Ga---CAGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 74536 0.75 0.569513
Target:  5'- aGCGCCGcucguguUACGCgUCUGUCugGUCcgCCGCg -3'
miRNA:   3'- aCGCGGU-------AUGCG-AGACAG--CAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 75088 0.67 0.946902
Target:  5'- gGCGCCGUuucggGgGCUCga-CGUCgCCGCc -3'
miRNA:   3'- aCGCGGUA-----UgCGAGacaGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 76493 0.66 0.96836
Target:  5'- -cCGCCGccGCGCUCcacGUCG-CUCCGg -3'
miRNA:   3'- acGCGGUa-UGCGAGa--CAGCaGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 80045 0.66 0.968063
Target:  5'- cGuCGUCGUccucgucGCGCgg-GUCGcUCUCCGCc -3'
miRNA:   3'- aC-GCGGUA-------UGCGagaCAGC-AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 83170 0.67 0.946902
Target:  5'- cGCgGCCGc-CGCcccgCcGUCGUCUCCGUc -3'
miRNA:   3'- aCG-CGGUauGCGa---GaCAGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 93636 0.68 0.905959
Target:  5'- cGUGCuCGgugGCGUUgUGUcCGUCUCUGUg -3'
miRNA:   3'- aCGCG-GUa--UGCGAgACA-GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96059 0.69 0.886917
Target:  5'- aGCGCCggcgGUACGaCUCgGcCGUCUCgGUc -3'
miRNA:   3'- aCGCGG----UAUGC-GAGaCaGCAGAGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.