Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 135342 | 0.66 | 0.951012 |
Target: 5'- cGCGCCGgggUGCUgCUGgcCGUCgaCCGCu -3' miRNA: 3'- aCGCGGUau-GCGA-GACa-GCAGa-GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 215490 | 0.66 | 0.951012 |
Target: 5'- gGCGCC---UGCUCUacuUCGcCUCCGUg -3' miRNA: 3'- aCGCGGuauGCGAGAc--AGCaGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 177575 | 0.66 | 0.951012 |
Target: 5'- cGuCGCCAggaUGCGCgccagCGUCUCCGg -3' miRNA: 3'- aC-GCGGU---AUGCGagacaGCAGAGGCg -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 132018 | 0.66 | 0.950611 |
Target: 5'- cGCGUCGgcggGCGgguccguCUCgGUCGUCgccUCCGCu -3' miRNA: 3'- aCGCGGUa---UGC-------GAGaCAGCAG---AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 183899 | 0.67 | 0.948573 |
Target: 5'- -uUGCCAUaugGCGCUCUuUCGUCcaugaaccacaccgCCGCg -3' miRNA: 3'- acGCGGUA---UGCGAGAcAGCAGa-------------GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 196690 | 0.67 | 0.946902 |
Target: 5'- cGCGCCcaucggGCGC-CUGuUCGgUUCCGUg -3' miRNA: 3'- aCGCGGua----UGCGaGAC-AGCaGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 83170 | 0.67 | 0.946902 |
Target: 5'- cGCgGCCGc-CGCcccgCcGUCGUCUCCGUc -3' miRNA: 3'- aCG-CGGUauGCGa---GaCAGCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 75088 | 0.67 | 0.946902 |
Target: 5'- gGCGCCGUuucggGgGCUCga-CGUCgCCGCc -3' miRNA: 3'- aCGCGGUA-----UgCGAGacaGCAGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 56722 | 0.67 | 0.946902 |
Target: 5'- gGUGCUGUagaugACGCUCuucuccUGUCGaUCUCUGUa -3' miRNA: 3'- aCGCGGUA-----UGCGAG------ACAGC-AGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 106322 | 0.67 | 0.946902 |
Target: 5'- aGCGCCuucgGCgGCUCUccccgGUCGcUCgucCCGCg -3' miRNA: 3'- aCGCGGua--UG-CGAGA-----CAGC-AGa--GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 127948 | 0.67 | 0.942572 |
Target: 5'- gGCcCCGUuCGCUCUccGUCGgUCcCCGCa -3' miRNA: 3'- aCGcGGUAuGCGAGA--CAGC-AGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 187459 | 0.67 | 0.942572 |
Target: 5'- gGCGgcCCGUGugagucCGCUCUGuaguuuUCGUCgUCCGCc -3' miRNA: 3'- aCGC--GGUAU------GCGAGAC------AGCAG-AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 45265 | 0.67 | 0.938018 |
Target: 5'- gGcCGCCGgcgggGCGCUCgcgcUCGUCU-CGCg -3' miRNA: 3'- aC-GCGGUa----UGCGAGac--AGCAGAgGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 143224 | 0.67 | 0.938018 |
Target: 5'- cGCGCCGUcCGCUCggacgCGgccaCCGCg -3' miRNA: 3'- aCGCGGUAuGCGAGaca--GCaga-GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 184402 | 0.67 | 0.938018 |
Target: 5'- cGcCGCCGggggGCGCUCgGcCuUCUCCGUc -3' miRNA: 3'- aC-GCGGUa---UGCGAGaCaGcAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 182633 | 0.67 | 0.938018 |
Target: 5'- cGCGCgAUcuucuccaGCGC-CUG-CGUCUCgGCc -3' miRNA: 3'- aCGCGgUA--------UGCGaGACaGCAGAGgCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 121729 | 0.67 | 0.938018 |
Target: 5'- gGCGCCGgcgACGC-CggaggaGUCGgagUCUUCGCg -3' miRNA: 3'- aCGCGGUa--UGCGaGa-----CAGC---AGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 148851 | 0.67 | 0.938018 |
Target: 5'- cGCuGCCGgaACGCcggCUGcCGcCUCCGCc -3' miRNA: 3'- aCG-CGGUa-UGCGa--GACaGCaGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 199201 | 0.67 | 0.93324 |
Target: 5'- --gGUCGUACGggUUGUCGUCcgaCCGCg -3' miRNA: 3'- acgCGGUAUGCgaGACAGCAGa--GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 219026 | 0.67 | 0.93324 |
Target: 5'- cUGCGaCGUGCuGgUCUacGUCGUCggCCGCg -3' miRNA: 3'- -ACGCgGUAUG-CgAGA--CAGCAGa-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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