miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 135342 0.66 0.951012
Target:  5'- cGCGCCGgggUGCUgCUGgcCGUCgaCCGCu -3'
miRNA:   3'- aCGCGGUau-GCGA-GACa-GCAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 215490 0.66 0.951012
Target:  5'- gGCGCC---UGCUCUacuUCGcCUCCGUg -3'
miRNA:   3'- aCGCGGuauGCGAGAc--AGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177575 0.66 0.951012
Target:  5'- cGuCGCCAggaUGCGCgccagCGUCUCCGg -3'
miRNA:   3'- aC-GCGGU---AUGCGagacaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 132018 0.66 0.950611
Target:  5'- cGCGUCGgcggGCGgguccguCUCgGUCGUCgccUCCGCu -3'
miRNA:   3'- aCGCGGUa---UGC-------GAGaCAGCAG---AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 183899 0.67 0.948573
Target:  5'- -uUGCCAUaugGCGCUCUuUCGUCcaugaaccacaccgCCGCg -3'
miRNA:   3'- acGCGGUA---UGCGAGAcAGCAGa-------------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 196690 0.67 0.946902
Target:  5'- cGCGCCcaucggGCGC-CUGuUCGgUUCCGUg -3'
miRNA:   3'- aCGCGGua----UGCGaGAC-AGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 83170 0.67 0.946902
Target:  5'- cGCgGCCGc-CGCcccgCcGUCGUCUCCGUc -3'
miRNA:   3'- aCG-CGGUauGCGa---GaCAGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 75088 0.67 0.946902
Target:  5'- gGCGCCGUuucggGgGCUCga-CGUCgCCGCc -3'
miRNA:   3'- aCGCGGUA-----UgCGAGacaGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 56722 0.67 0.946902
Target:  5'- gGUGCUGUagaugACGCUCuucuccUGUCGaUCUCUGUa -3'
miRNA:   3'- aCGCGGUA-----UGCGAG------ACAGC-AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 106322 0.67 0.946902
Target:  5'- aGCGCCuucgGCgGCUCUccccgGUCGcUCgucCCGCg -3'
miRNA:   3'- aCGCGGua--UG-CGAGA-----CAGC-AGa--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 127948 0.67 0.942572
Target:  5'- gGCcCCGUuCGCUCUccGUCGgUCcCCGCa -3'
miRNA:   3'- aCGcGGUAuGCGAGA--CAGC-AGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 187459 0.67 0.942572
Target:  5'- gGCGgcCCGUGugagucCGCUCUGuaguuuUCGUCgUCCGCc -3'
miRNA:   3'- aCGC--GGUAU------GCGAGAC------AGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 45265 0.67 0.938018
Target:  5'- gGcCGCCGgcgggGCGCUCgcgcUCGUCU-CGCg -3'
miRNA:   3'- aC-GCGGUa----UGCGAGac--AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 143224 0.67 0.938018
Target:  5'- cGCGCCGUcCGCUCggacgCGgccaCCGCg -3'
miRNA:   3'- aCGCGGUAuGCGAGaca--GCaga-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 184402 0.67 0.938018
Target:  5'- cGcCGCCGggggGCGCUCgGcCuUCUCCGUc -3'
miRNA:   3'- aC-GCGGUa---UGCGAGaCaGcAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 182633 0.67 0.938018
Target:  5'- cGCGCgAUcuucuccaGCGC-CUG-CGUCUCgGCc -3'
miRNA:   3'- aCGCGgUA--------UGCGaGACaGCAGAGgCG- -5'
8955 5' -55.7 NC_002512.2 + 121729 0.67 0.938018
Target:  5'- gGCGCCGgcgACGC-CggaggaGUCGgagUCUUCGCg -3'
miRNA:   3'- aCGCGGUa--UGCGaGa-----CAGC---AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 148851 0.67 0.938018
Target:  5'- cGCuGCCGgaACGCcggCUGcCGcCUCCGCc -3'
miRNA:   3'- aCG-CGGUa-UGCGa--GACaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 199201 0.67 0.93324
Target:  5'- --gGUCGUACGggUUGUCGUCcgaCCGCg -3'
miRNA:   3'- acgCGGUAUGCgaGACAGCAGa--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 219026 0.67 0.93324
Target:  5'- cUGCGaCGUGCuGgUCUacGUCGUCggCCGCg -3'
miRNA:   3'- -ACGCgGUAUG-CgAGA--CAGCAGa-GGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.