miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 108052 0.67 0.847805
Target:  5'- cGCCGUCCUCccCCCCGUcCGGCcgACg- -3'
miRNA:   3'- -UGGUAGGAGu-GGGGCGcGCUGa-UGgu -5'
8956 3' -58.9 NC_002512.2 + 87965 0.67 0.847042
Target:  5'- uUUAUUCUCACCCCGUcggggccGCGGCgccCCGa -3'
miRNA:   3'- uGGUAGGAGUGGGGCG-------CGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 196238 0.67 0.840101
Target:  5'- gACCcuGUCCgccgCGCCCgCGCGCGcCUcucGCCu -3'
miRNA:   3'- -UGG--UAGGa---GUGGG-GCGCGCuGA---UGGu -5'
8956 3' -58.9 NC_002512.2 + 96486 0.67 0.840101
Target:  5'- gGCCGU-CUCGCCcuccaugguCCGgGCGACcGCCGg -3'
miRNA:   3'- -UGGUAgGAGUGG---------GGCgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 115009 0.67 0.840101
Target:  5'- cACCuUCCUCcagACCCUGCuGCGGCacgcgGCCc -3'
miRNA:   3'- -UGGuAGGAG---UGGGGCG-CGCUGa----UGGu -5'
8956 3' -58.9 NC_002512.2 + 195884 0.67 0.840101
Target:  5'- uCCGUCgUCaggaaggaGCCCUGCGUGGggGCCAa -3'
miRNA:   3'- uGGUAGgAG--------UGGGGCGCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 147488 0.67 0.840101
Target:  5'- cACCGg-CUC-CCCCGCGCG-CggaGCCAc -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCuGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 182332 0.67 0.840101
Target:  5'- aGCUcgCCUCccgcguguACUCCGCGCccGGCUGCUg -3'
miRNA:   3'- -UGGuaGGAG--------UGGGGCGCG--CUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 71726 0.67 0.840101
Target:  5'- gACCgAUCCUCccaucaguaccGCUCC-CGCGACUACgGg -3'
miRNA:   3'- -UGG-UAGGAG-----------UGGGGcGCGCUGAUGgU- -5'
8956 3' -58.9 NC_002512.2 + 43653 0.67 0.840101
Target:  5'- gACCGggaCCUCGCCCuCG-GUGGCgGCCGc -3'
miRNA:   3'- -UGGUa--GGAGUGGG-GCgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 94371 0.67 0.832224
Target:  5'- gGCCAUCCUCAggaCGUGCGug-GCCAu -3'
miRNA:   3'- -UGGUAGGAGUgggGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 43170 0.67 0.832224
Target:  5'- gGCCGacUCCUCGCccaaCCCGCcGCaGACgaagGCCGa -3'
miRNA:   3'- -UGGU--AGGAGUG----GGGCG-CG-CUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 68954 0.67 0.832224
Target:  5'- gACCccCC-CACCgCCGCaGCGACUGuCCGc -3'
miRNA:   3'- -UGGuaGGaGUGG-GGCG-CGCUGAU-GGU- -5'
8956 3' -58.9 NC_002512.2 + 37066 0.67 0.832224
Target:  5'- uCCA-CCUgGCCCCgGUGCGAUcGCCc -3'
miRNA:   3'- uGGUaGGAgUGGGG-CGCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 3425 0.67 0.832224
Target:  5'- gGCC-UCCUCccGCCUCGCGgGGCUGg-- -3'
miRNA:   3'- -UGGuAGGAG--UGGGGCGCgCUGAUggu -5'
8956 3' -58.9 NC_002512.2 + 91773 0.67 0.832224
Target:  5'- uCCGcCUUCACCCCcagggccagcGUGCGGCUGCg- -3'
miRNA:   3'- uGGUaGGAGUGGGG----------CGCGCUGAUGgu -5'
8956 3' -58.9 NC_002512.2 + 138963 0.67 0.824182
Target:  5'- gGCCGcgCCg-GCCCCGUucGCGGCcGCCAg -3'
miRNA:   3'- -UGGUa-GGagUGGGGCG--CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 39355 0.67 0.82092
Target:  5'- aGCCGgucCCUCGCCCCGaccagcucgucgaGgGAgUGCCGg -3'
miRNA:   3'- -UGGUa--GGAGUGGGGCg------------CgCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 186824 0.67 0.807625
Target:  5'- gACCGgugCCUCggcgagGCCCUGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUa--GGAG------UGGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 180899 0.67 0.80509
Target:  5'- gGCCGUCUUCcaGCUCCGCGUucuccgccacgaucGACU-CCAg -3'
miRNA:   3'- -UGGUAGGAG--UGGGGCGCG--------------CUGAuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.