miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 205627 0.69 0.736203
Target:  5'- cGCCGUCCUucCugCCCGCGgGGgacGCCGu -3'
miRNA:   3'- -UGGUAGGA--GugGGGCGCgCUga-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 173704 0.69 0.736203
Target:  5'- cGCCGUCCUgggaCugCCCGCGaccgugcuCGGCaACCAc -3'
miRNA:   3'- -UGGUAGGA----GugGGGCGC--------GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 72850 0.69 0.736203
Target:  5'- uGCCggGUCCUCGCUCCGgGCcGCgucGCCGu -3'
miRNA:   3'- -UGG--UAGGAGUGGGGCgCGcUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 83008 0.69 0.72682
Target:  5'- cGCCugggCCUCcgggcgguagugGCCCCGCGCGAgCUcgagcacccuggGCCAg -3'
miRNA:   3'- -UGGua--GGAG------------UGGGGCGCGCU-GA------------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 111395 0.69 0.72682
Target:  5'- aGCCGUCC-CGCCCCG-GCaGCUcggcGCCGu -3'
miRNA:   3'- -UGGUAGGaGUGGGGCgCGcUGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 114011 0.69 0.72682
Target:  5'- cGCCGUCg--GCCCCGCaGCGGC-ACCGg -3'
miRNA:   3'- -UGGUAGgagUGGGGCG-CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 70835 0.69 0.717362
Target:  5'- uCCG-CCUCGCCCCGgGaCGAgaUGCCGc -3'
miRNA:   3'- uGGUaGGAGUGGGGCgC-GCUg-AUGGU- -5'
8956 3' -58.9 NC_002512.2 + 9760 0.69 0.717362
Target:  5'- aGCCGgacCCgcCGCCCCGCGUGGCgGCUc -3'
miRNA:   3'- -UGGUa--GGa-GUGGGGCGCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 3123 0.69 0.707837
Target:  5'- -aCGUCCUCGCCCUcCGCGuCguccgGCCGg -3'
miRNA:   3'- ugGUAGGAGUGGGGcGCGCuGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 119620 0.69 0.707837
Target:  5'- cGCUcgCCUCccGCCCCaGCGCGGCgcuuuauaaGCCGa -3'
miRNA:   3'- -UGGuaGGAG--UGGGG-CGCGCUGa--------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 45338 0.69 0.707837
Target:  5'- gGCCGUCCgccggcccgCGCCgCCGgcugacccCGCGACUGCUg -3'
miRNA:   3'- -UGGUAGGa--------GUGG-GGC--------GCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 81413 0.69 0.707837
Target:  5'- cUCGUCCUCcCCgCCGuCGCGGCU-CCGu -3'
miRNA:   3'- uGGUAGGAGuGG-GGC-GCGCUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 106738 0.69 0.698254
Target:  5'- cGCC-UCCUCgGCCCCG-GCGGCgcuCCGc -3'
miRNA:   3'- -UGGuAGGAG-UGGGGCgCGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 109099 0.69 0.698254
Target:  5'- cGCCGUCCcgcCGCCCC-CGCcGACgGCCGc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGcGCG-CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 224911 0.7 0.688621
Target:  5'- cGCCGUCUgCACCuCCGuCGCGGggACCGg -3'
miRNA:   3'- -UGGUAGGaGUGG-GGC-GCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 98265 0.7 0.688621
Target:  5'- cCCGUCCUUGcCCCCGCGCcGCUcguCCc -3'
miRNA:   3'- uGGUAGGAGU-GGGGCGCGcUGAu--GGu -5'
8956 3' -58.9 NC_002512.2 + 3370 0.7 0.678944
Target:  5'- gACCGUCCgccCGCUCCGCGgGGC--CCAc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGCGCgCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 99179 0.7 0.666313
Target:  5'- cGCCAgucuggUCCUCGCCCUGauccuccagaucucCGCGGCcGCCGc -3'
miRNA:   3'- -UGGU------AGGAGUGGGGC--------------GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 112375 0.7 0.659493
Target:  5'- uCCGUCCUCACCgCCgucaGCGCGAac-CCGg -3'
miRNA:   3'- uGGUAGGAGUGG-GG----CGCGCUgauGGU- -5'
8956 3' -58.9 NC_002512.2 + 9951 0.7 0.649734
Target:  5'- uCCAcCCUC-CCCCGCGCgucGACggagACCGa -3'
miRNA:   3'- uGGUaGGAGuGGGGCGCG---CUGa---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.