miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 212199 1.11 0.004539
Target:  5'- gUCACGCUGCUCGACGAGGAGAUCGUCg -3'
miRNA:   3'- -AGUGCGACGAGCUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 123018 0.83 0.235443
Target:  5'- ---gGCUGCUcgugcgCGACGAGGAGGUCGUCg -3'
miRNA:   3'- agugCGACGA------GCUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 139637 0.8 0.362361
Target:  5'- cCACGCacUGCUCGACGAGG-GAcgccaacaUCGUCg -3'
miRNA:   3'- aGUGCG--ACGAGCUGCUCCuCU--------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 128367 0.78 0.473095
Target:  5'- gUCGCGCggugcccccugUGCUaCGACGGGGAGAgcgacUCGUCc -3'
miRNA:   3'- -AGUGCG-----------ACGA-GCUGCUCCUCU-----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 87411 0.76 0.539314
Target:  5'- -gGC-CUGacaUCGugGGGGAGAUCGUCa -3'
miRNA:   3'- agUGcGACg--AGCugCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 100276 0.75 0.638376
Target:  5'- -gACGgaGCUCGGCGAGcGGGGcgaguUCGUCg -3'
miRNA:   3'- agUGCgaCGAGCUGCUC-CUCU-----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 59747 0.73 0.707811
Target:  5'- --cUGCUGCUgGACGAGGAGA-CGg- -3'
miRNA:   3'- aguGCGACGAgCUGCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 130550 0.73 0.727223
Target:  5'- gUC-CGgaUGCUCGuCGAGGAGuUCGUCg -3'
miRNA:   3'- -AGuGCg-ACGAGCuGCUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 169003 0.73 0.736815
Target:  5'- gUCGCGCgccgGCUCGGCGAuccGGGcGggCGUCc -3'
miRNA:   3'- -AGUGCGa---CGAGCUGCU---CCU-CuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 83206 0.73 0.736815
Target:  5'- cCGCGC-GCggGGCGGGGGGAgCGUCg -3'
miRNA:   3'- aGUGCGaCGagCUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 97497 0.73 0.736815
Target:  5'- aUCACGUUcGUccacgacuUCcGCGGGGAGGUCGUCg -3'
miRNA:   3'- -AGUGCGA-CG--------AGcUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 119067 0.73 0.743479
Target:  5'- aUCGCGCUGCugucccucgaccggUCGcGCGAGGAGGUgCGg- -3'
miRNA:   3'- -AGUGCGACG--------------AGC-UGCUCCUCUA-GCag -5'
8957 3' -54.9 NC_002512.2 + 83356 0.72 0.755731
Target:  5'- gCAUGCUcGgUCGGCGAuguGGAcGAUCGUCg -3'
miRNA:   3'- aGUGCGA-CgAGCUGCU---CCU-CUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 161711 0.72 0.765038
Target:  5'- -gACGCgGC-CGGCGAcGGGAUCGUCu -3'
miRNA:   3'- agUGCGaCGaGCUGCUcCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 163435 0.72 0.765038
Target:  5'- cUCACGUaGC-CGGCgGAGGAGAgacgugUCGUCg -3'
miRNA:   3'- -AGUGCGaCGaGCUG-CUCCUCU------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 228084 0.72 0.783303
Target:  5'- aCGgGCUGCacacggUCGggaGCGAGGAGggCGUCg -3'
miRNA:   3'- aGUgCGACG------AGC---UGCUCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 223094 0.71 0.80105
Target:  5'- cCGCgGCUGCgUCGACGGGGAGGggGaUCc -3'
miRNA:   3'- aGUG-CGACG-AGCUGCUCCUCUagC-AG- -5'
8957 3' -54.9 NC_002512.2 + 153734 0.7 0.850547
Target:  5'- -gGCGCUGUcCGugGGGG-GGUgGUCg -3'
miRNA:   3'- agUGCGACGaGCugCUCCuCUAgCAG- -5'
8957 3' -54.9 NC_002512.2 + 219205 0.7 0.861171
Target:  5'- aCcCGCUGCacugccgggccggccUCGGCGAGGucgGGAUCGUg -3'
miRNA:   3'- aGuGCGACG---------------AGCUGCUCC---UCUAGCAg -5'
8957 3' -54.9 NC_002512.2 + 45370 0.7 0.865606
Target:  5'- cCGCGaCUGCUgCGACGAGGAcgcgggccggGAcUGUCg -3'
miRNA:   3'- aGUGC-GACGA-GCUGCUCCU----------CUaGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.