miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 3988 0.67 0.962139
Target:  5'- aCGCGCUcCUCGggagGCGGGGGG--CGUCg -3'
miRNA:   3'- aGUGCGAcGAGC----UGCUCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 5089 0.66 0.971333
Target:  5'- gUCGuCGCcgGCgUCGGCGcgggcGGGAGAgacaUCGUCg -3'
miRNA:   3'- -AGU-GCGa-CG-AGCUGC-----UCCUCU----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 11156 0.68 0.92295
Target:  5'- aCACGC-GCUCGACGGG----UCGUCc -3'
miRNA:   3'- aGUGCGaCGAGCUGCUCcucuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 15543 0.7 0.865606
Target:  5'- cUCugGCU-CUCGcUGAGGAGGccggagUCGUCg -3'
miRNA:   3'- -AGugCGAcGAGCuGCUCCUCU------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 24681 0.68 0.933232
Target:  5'- cCGgGCcGCUCgGGCGGGGGucUCGUCg -3'
miRNA:   3'- aGUgCGaCGAG-CUGCUCCUcuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 27974 0.66 0.978802
Target:  5'- aUC-CGCgGUUCGGauuacaucuuCGAGGAGGUCG-Cg -3'
miRNA:   3'- -AGuGCGaCGAGCU----------GCUCCUCUAGCaG- -5'
8957 3' -54.9 NC_002512.2 + 29000 0.67 0.951073
Target:  5'- uUCACGCUGaaCGACGuGGuGGgcggCGUg -3'
miRNA:   3'- -AGUGCGACgaGCUGCuCCuCUa---GCAg -5'
8957 3' -54.9 NC_002512.2 + 33998 0.68 0.933232
Target:  5'- cCACGCaggGCUCcuuccuGACGAcGGAGGUCcUCa -3'
miRNA:   3'- aGUGCGa--CGAG------CUGCU-CCUCUAGcAG- -5'
8957 3' -54.9 NC_002512.2 + 39698 0.69 0.886678
Target:  5'- cCGCGCUagaacccgggacGUUCGACGAGGAuuUCGg- -3'
miRNA:   3'- aGUGCGA------------CGAGCUGCUCCUcuAGCag -5'
8957 3' -54.9 NC_002512.2 + 45370 0.7 0.865606
Target:  5'- cCGCGaCUGCUgCGACGAGGAcgcgggccggGAcUGUCg -3'
miRNA:   3'- aGUGC-GACGA-GCUGCUCCU----------CUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 49807 0.67 0.962139
Target:  5'- aUCGCGgacgagaaaCUGCggaGAC-AGGGGGUCGUCc -3'
miRNA:   3'- -AGUGC---------GACGag-CUGcUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 59747 0.73 0.707811
Target:  5'- --cUGCUGCUgGACGAGGAGA-CGg- -3'
miRNA:   3'- aguGCGACGAgCUGCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 65413 0.69 0.917467
Target:  5'- cCuCGUaGCUCGGCG-GGcGGUCGUCg -3'
miRNA:   3'- aGuGCGaCGAGCUGCuCCuCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 70806 0.67 0.958664
Target:  5'- gUUGCGCagGUUgGGgGAGGGGcgCGUCg -3'
miRNA:   3'- -AGUGCGa-CGAgCUgCUCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 72886 0.68 0.93803
Target:  5'- cUCACGCUGCUCcgcagcaucCGGGGAGAggaUUGg- -3'
miRNA:   3'- -AGUGCGACGAGcu-------GCUCCUCU---AGCag -5'
8957 3' -54.9 NC_002512.2 + 75184 0.66 0.976494
Target:  5'- gUCGCGCcGCUCGACGccGGAcGGcCGcUCg -3'
miRNA:   3'- -AGUGCGaCGAGCUGCu-CCU-CUaGC-AG- -5'
8957 3' -54.9 NC_002512.2 + 81690 0.69 0.893278
Target:  5'- gCcCGCaGCUCGGCGgccGGGAGggUGUCg -3'
miRNA:   3'- aGuGCGaCGAGCUGC---UCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 82423 0.66 0.976494
Target:  5'- gUCcCGCgGCggagggGACGAGGGGG-CGUCg -3'
miRNA:   3'- -AGuGCGaCGag----CUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 83206 0.73 0.736815
Target:  5'- cCGCGC-GCggGGCGGGGGGAgCGUCg -3'
miRNA:   3'- aGUGCGaCGagCUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 83356 0.72 0.755731
Target:  5'- gCAUGCUcGgUCGGCGAuguGGAcGAUCGUCg -3'
miRNA:   3'- aGUGCGA-CgAGCUGCU---CCU-CUAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.