miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 65413 0.69 0.917467
Target:  5'- cCuCGUaGCUCGGCG-GGcGGUCGUCg -3'
miRNA:   3'- aGuGCGaCGAGCUGCuCCuCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 85286 0.7 0.865606
Target:  5'- -gGCGCggacCUCGuGCGAGGGGAUCGa- -3'
miRNA:   3'- agUGCGac--GAGC-UGCUCCUCUAGCag -5'
8957 3' -54.9 NC_002512.2 + 147805 0.7 0.879863
Target:  5'- aCGCGCgcccgugGCUCGAgagccuCGGGGGGAUCa-- -3'
miRNA:   3'- aGUGCGa------CGAGCU------GCUCCUCUAGcag -5'
8957 3' -54.9 NC_002512.2 + 112496 0.69 0.886678
Target:  5'- gCGCGCaGCcCGACGAGuAGAUCGa- -3'
miRNA:   3'- aGUGCGaCGaGCUGCUCcUCUAGCag -5'
8957 3' -54.9 NC_002512.2 + 81690 0.69 0.893278
Target:  5'- gCcCGCaGCUCGGCGgccGGGAGggUGUCg -3'
miRNA:   3'- aGuGCGaCGAGCUGC---UCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 89110 0.69 0.893278
Target:  5'- gCGCGuCUGgUCGGCGGucguuuGGAGggCGUCu -3'
miRNA:   3'- aGUGC-GACgAGCUGCU------CCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 106644 0.69 0.893278
Target:  5'- -gGCGCcgGCUCGGCGAGuaguccuccGAGAUguagCGUCg -3'
miRNA:   3'- agUGCGa-CGAGCUGCUC---------CUCUA----GCAG- -5'
8957 3' -54.9 NC_002512.2 + 141029 0.69 0.911757
Target:  5'- cCACGgU-CUgGACGAGGAGAUCa-- -3'
miRNA:   3'- aGUGCgAcGAgCUGCUCCUCUAGcag -5'
8957 3' -54.9 NC_002512.2 + 226573 0.69 0.911757
Target:  5'- aCGCGUgugGCggaUGGCGAGGAGGcaUCGUg -3'
miRNA:   3'- aGUGCGa--CGa--GCUGCUCCUCU--AGCAg -5'
8957 3' -54.9 NC_002512.2 + 45370 0.7 0.865606
Target:  5'- cCGCGaCUGCUgCGACGAGGAcgcgggccggGAcUGUCg -3'
miRNA:   3'- aGUGC-GACGA-GCUGCUCCU----------CUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 15543 0.7 0.865606
Target:  5'- cUCugGCU-CUCGcUGAGGAGGccggagUCGUCg -3'
miRNA:   3'- -AGugCGAcGAGCuGCUCCUCU------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 153734 0.7 0.850547
Target:  5'- -gGCGCUGUcCGugGGGG-GGUgGUCg -3'
miRNA:   3'- agUGCGACGaGCugCUCCuCUAgCAG- -5'
8957 3' -54.9 NC_002512.2 + 128367 0.78 0.473095
Target:  5'- gUCGCGCggugcccccugUGCUaCGACGGGGAGAgcgacUCGUCc -3'
miRNA:   3'- -AGUGCG-----------ACGA-GCUGCUCCUCU-----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 87411 0.76 0.539314
Target:  5'- -gGC-CUGacaUCGugGGGGAGAUCGUCa -3'
miRNA:   3'- agUGcGACg--AGCugCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 100276 0.75 0.638376
Target:  5'- -gACGgaGCUCGGCGAGcGGGGcgaguUCGUCg -3'
miRNA:   3'- agUGCgaCGAGCUGCUC-CUCU-----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 59747 0.73 0.707811
Target:  5'- --cUGCUGCUgGACGAGGAGA-CGg- -3'
miRNA:   3'- aguGCGACGAgCUGCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 130550 0.73 0.727223
Target:  5'- gUC-CGgaUGCUCGuCGAGGAGuUCGUCg -3'
miRNA:   3'- -AGuGCg-ACGAGCuGCUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 97497 0.73 0.736815
Target:  5'- aUCACGUUcGUccacgacuUCcGCGGGGAGGUCGUCg -3'
miRNA:   3'- -AGUGCGA-CG--------AGcUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 83206 0.73 0.736815
Target:  5'- cCGCGC-GCggGGCGGGGGGAgCGUCg -3'
miRNA:   3'- aGUGCGaCGagCUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 83356 0.72 0.755731
Target:  5'- gCAUGCUcGgUCGGCGAuguGGAcGAUCGUCg -3'
miRNA:   3'- aGUGCGA-CgAGCUGCU---CCU-CUAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.