miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 3988 0.67 0.962139
Target:  5'- aCGCGCUcCUCGggagGCGGGGGG--CGUCg -3'
miRNA:   3'- aGUGCGAcGAGC----UGCUCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 215174 0.67 0.96008
Target:  5'- gUCcUGCUGCUCGGgGAGcGGAcgcgggucuaccucuUCGUCg -3'
miRNA:   3'- -AGuGCGACGAGCUgCUCcUCU---------------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 70806 0.67 0.958664
Target:  5'- gUUGCGCagGUUgGGgGAGGGGcgCGUCg -3'
miRNA:   3'- -AGUGCGa-CGAgCUgCUCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 115031 0.67 0.954977
Target:  5'- cCGCGCUcaGCUCGA--AGGGGAUgGUg -3'
miRNA:   3'- aGUGCGA--CGAGCUgcUCCUCUAgCAg -5'
8957 3' -54.9 NC_002512.2 + 135260 0.67 0.951073
Target:  5'- cCGCGCcgcGCUCGACGAGGccuGGGcCGcCu -3'
miRNA:   3'- aGUGCGa--CGAGCUGCUCC---UCUaGCaG- -5'
8957 3' -54.9 NC_002512.2 + 29000 0.67 0.951073
Target:  5'- uUCACGCUGaaCGACGuGGuGGgcggCGUg -3'
miRNA:   3'- -AGUGCGACgaGCUGCuCCuCUa---GCAg -5'
8957 3' -54.9 NC_002512.2 + 186813 0.67 0.951073
Target:  5'- cCGCGCcccgggaccggUGcCUCGGCGAGGcccuGcgCGUCg -3'
miRNA:   3'- aGUGCG-----------AC-GAGCUGCUCCu---CuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 186469 0.67 0.951073
Target:  5'- cCGUGCUGCUCGGCcGGcGGAUCGcCg -3'
miRNA:   3'- aGUGCGACGAGCUGcUCcUCUAGCaG- -5'
8957 3' -54.9 NC_002512.2 + 195798 0.67 0.951073
Target:  5'- gCGUGUUGCUCcgcuGCGGGGAcAUCGUCg -3'
miRNA:   3'- aGUGCGACGAGc---UGCUCCUcUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 88611 0.67 0.950671
Target:  5'- gCGCGCgGC-CGGCGucGGGAcgaacguGGUCGUCg -3'
miRNA:   3'- aGUGCGaCGaGCUGC--UCCU-------CUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 172114 0.67 0.948626
Target:  5'- ---aGCUGCuccuguccggcaccgUCGACGAGGAGcgCGa- -3'
miRNA:   3'- agugCGACG---------------AGCUGCUCCUCuaGCag -5'
8957 3' -54.9 NC_002512.2 + 220676 0.68 0.93803
Target:  5'- cCGCGUcgUGCUgGGCGAcgggacGGAGGUCaGUCc -3'
miRNA:   3'- aGUGCG--ACGAgCUGCU------CCUCUAG-CAG- -5'
8957 3' -54.9 NC_002512.2 + 72886 0.68 0.93803
Target:  5'- cUCACGCUGCUCcgcagcaucCGGGGAGAggaUUGg- -3'
miRNA:   3'- -AGUGCGACGAGcu-------GCUCCUCU---AGCag -5'
8957 3' -54.9 NC_002512.2 + 211060 0.68 0.933232
Target:  5'- cUC-CGCUcGCUCGuCcAGGAGcUCGUCg -3'
miRNA:   3'- -AGuGCGA-CGAGCuGcUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 33998 0.68 0.933232
Target:  5'- cCACGCaggGCUCcuuccuGACGAcGGAGGUCcUCa -3'
miRNA:   3'- aGUGCGa--CGAG------CUGCU-CCUCUAGcAG- -5'
8957 3' -54.9 NC_002512.2 + 24681 0.68 0.933232
Target:  5'- cCGgGCcGCUCgGGCGGGGGucUCGUCg -3'
miRNA:   3'- aGUgCGaCGAG-CUGCUCCUcuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 155416 0.68 0.933232
Target:  5'- aC-CGUUGCUCGugGAagacgguuuGGAGGUCaUCg -3'
miRNA:   3'- aGuGCGACGAGCugCU---------CCUCUAGcAG- -5'
8957 3' -54.9 NC_002512.2 + 130686 0.68 0.928205
Target:  5'- aCGgGCUGCUCGugGuGGGGccCGcCg -3'
miRNA:   3'- aGUgCGACGAGCugCuCCUCuaGCaG- -5'
8957 3' -54.9 NC_002512.2 + 151053 0.68 0.92295
Target:  5'- gUCACGCggucCUCGACGgcGGGGGAUgCGgUCu -3'
miRNA:   3'- -AGUGCGac--GAGCUGC--UCCUCUA-GC-AG- -5'
8957 3' -54.9 NC_002512.2 + 11156 0.68 0.92295
Target:  5'- aCACGC-GCUCGACGGG----UCGUCc -3'
miRNA:   3'- aGUGCGaCGAGCUGCUCcucuAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.