miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 4580 0.69 0.873715
Target:  5'- uGGGGCGGCGgaggaggcggCGCCgcgGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGUacaa------GCGG---CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 7700 0.69 0.876489
Target:  5'- cGGACGA------CGCCGGCCGCGg- -3'
miRNA:   3'- cCCUGCUguacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 7750 0.66 0.952116
Target:  5'- gGGGGCGgaGCcgGggcgguaGUCGGCCGCGg- -3'
miRNA:   3'- -CCCUGC--UGuaCaag----CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 8441 0.68 0.914109
Target:  5'- cGGACGACcg---CGCCccGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGuacaaGCGG--CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 8850 0.66 0.962833
Target:  5'- cGGAacaGugGUGUgcacCGUCGGUCACGa- -3'
miRNA:   3'- cCCUg--CugUACAa---GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 8858 0.72 0.735143
Target:  5'- cGGGCGGCAccccgUUGgUGGCCGCGUGg -3'
miRNA:   3'- cCCUGCUGUaca--AGCgGCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 8985 0.69 0.847356
Target:  5'- uGGACGAacuCGUagaggUCGUCGGCCACGaUGg -3'
miRNA:   3'- cCCUGCU---GUAca---AGCGGCCGGUGC-AC- -5'
8957 5' -56.4 NC_002512.2 + 9749 0.7 0.839609
Target:  5'- gGGGGCGGCGga---GCCGGacccgccgccCCGCGUGg -3'
miRNA:   3'- -CCCUGCUGUacaagCGGCC----------GGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 10594 0.67 0.919626
Target:  5'- cGGACGACGaa---GCgGGCCACGg- -3'
miRNA:   3'- cCCUGCUGUacaagCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 12086 0.72 0.724763
Target:  5'- cGGGACGGCGacgccgauccgccaGCCGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGUacaag---------CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 16588 0.68 0.908372
Target:  5'- aGGAaauCGACGaGgUCGUCGGCCACGc- -3'
miRNA:   3'- cCCU---GCUGUaCaAGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 20741 0.67 0.939501
Target:  5'- -cGACGACGUGcUCGCCGucgucucCCACGa- -3'
miRNA:   3'- ccCUGCUGUACaAGCGGCc------GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 22363 0.66 0.955156
Target:  5'- cGGGAgGACGcGgccccguccucgUCGUCGGUCGCGg- -3'
miRNA:   3'- -CCCUgCUGUaCa-----------AGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 29951 0.66 0.952116
Target:  5'- uGGACaGCcgGUgagcggCgGCCGGCCGCGa- -3'
miRNA:   3'- cCCUGcUGuaCAa-----G-CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 34831 0.66 0.954409
Target:  5'- cGGACGACccucccgccCGCgGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGuacaa----GCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 45415 0.74 0.59921
Target:  5'- cGGGcgcuCGACGgcggCGCCGGCCGCGg- -3'
miRNA:   3'- -CCCu---GCUGUacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 49604 0.66 0.952116
Target:  5'- aGGGCGACggGaaCGCCGccGCCAUGa- -3'
miRNA:   3'- cCCUGCUGuaCaaGCGGC--CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 50446 0.66 0.952116
Target:  5'- cGGAUGucCAgaagaCGCCGGCCGCGa- -3'
miRNA:   3'- cCCUGCu-GUacaa-GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 55154 0.68 0.883283
Target:  5'- uGGGcuCGuACGUGUUCGCCGuGcCCAUGa- -3'
miRNA:   3'- -CCCu-GC-UGUACAAGCGGC-C-GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 55862 0.66 0.952116
Target:  5'- aGGACuucgaggcgGACAUGUaCGCgGGCUGCGa- -3'
miRNA:   3'- cCCUG---------CUGUACAaGCGgCCGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.