Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8957 | 5' | -56.4 | NC_002512.2 | + | 4580 | 0.69 | 0.873715 |
Target: 5'- uGGGGCGGCGgaggaggcggCGCCgcgGGCCGCGa- -3' miRNA: 3'- -CCCUGCUGUacaa------GCGG---CCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 7700 | 0.69 | 0.876489 |
Target: 5'- cGGACGA------CGCCGGCCGCGg- -3' miRNA: 3'- cCCUGCUguacaaGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 7750 | 0.66 | 0.952116 |
Target: 5'- gGGGGCGgaGCcgGggcgguaGUCGGCCGCGg- -3' miRNA: 3'- -CCCUGC--UGuaCaag----CGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 8441 | 0.68 | 0.914109 |
Target: 5'- cGGACGACcg---CGCCccGGCCGCGg- -3' miRNA: 3'- cCCUGCUGuacaaGCGG--CCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 8850 | 0.66 | 0.962833 |
Target: 5'- cGGAacaGugGUGUgcacCGUCGGUCACGa- -3' miRNA: 3'- cCCUg--CugUACAa---GCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 8858 | 0.72 | 0.735143 |
Target: 5'- cGGGCGGCAccccgUUGgUGGCCGCGUGg -3' miRNA: 3'- cCCUGCUGUaca--AGCgGCCGGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 8985 | 0.69 | 0.847356 |
Target: 5'- uGGACGAacuCGUagaggUCGUCGGCCACGaUGg -3' miRNA: 3'- cCCUGCU---GUAca---AGCGGCCGGUGC-AC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 9749 | 0.7 | 0.839609 |
Target: 5'- gGGGGCGGCGga---GCCGGacccgccgccCCGCGUGg -3' miRNA: 3'- -CCCUGCUGUacaagCGGCC----------GGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 10594 | 0.67 | 0.919626 |
Target: 5'- cGGACGACGaa---GCgGGCCACGg- -3' miRNA: 3'- cCCUGCUGUacaagCGgCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 12086 | 0.72 | 0.724763 |
Target: 5'- cGGGACGGCGacgccgauccgccaGCCGGCCGCGa- -3' miRNA: 3'- -CCCUGCUGUacaag---------CGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 16588 | 0.68 | 0.908372 |
Target: 5'- aGGAaauCGACGaGgUCGUCGGCCACGc- -3' miRNA: 3'- cCCU---GCUGUaCaAGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 20741 | 0.67 | 0.939501 |
Target: 5'- -cGACGACGUGcUCGCCGucgucucCCACGa- -3' miRNA: 3'- ccCUGCUGUACaAGCGGCc------GGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 22363 | 0.66 | 0.955156 |
Target: 5'- cGGGAgGACGcGgccccguccucgUCGUCGGUCGCGg- -3' miRNA: 3'- -CCCUgCUGUaCa-----------AGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 29951 | 0.66 | 0.952116 |
Target: 5'- uGGACaGCcgGUgagcggCgGCCGGCCGCGa- -3' miRNA: 3'- cCCUGcUGuaCAa-----G-CGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 34831 | 0.66 | 0.954409 |
Target: 5'- cGGACGACccucccgccCGCgGGCCGCGg- -3' miRNA: 3'- cCCUGCUGuacaa----GCGgCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 45415 | 0.74 | 0.59921 |
Target: 5'- cGGGcgcuCGACGgcggCGCCGGCCGCGg- -3' miRNA: 3'- -CCCu---GCUGUacaaGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 49604 | 0.66 | 0.952116 |
Target: 5'- aGGGCGACggGaaCGCCGccGCCAUGa- -3' miRNA: 3'- cCCUGCUGuaCaaGCGGC--CGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 50446 | 0.66 | 0.952116 |
Target: 5'- cGGAUGucCAgaagaCGCCGGCCGCGa- -3' miRNA: 3'- cCCUGCu-GUacaa-GCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 55154 | 0.68 | 0.883283 |
Target: 5'- uGGGcuCGuACGUGUUCGCCGuGcCCAUGa- -3' miRNA: 3'- -CCCu-GC-UGUACAAGCGGC-C-GGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 55862 | 0.66 | 0.952116 |
Target: 5'- aGGACuucgaggcgGACAUGUaCGCgGGCUGCGa- -3' miRNA: 3'- cCCUG---------CUGUACAaGCGgCCGGUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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