miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 123279 0.69 0.876489
Target:  5'- cGGAgGACAUGgagCGCCGGCUg---- -3'
miRNA:   3'- cCCUgCUGUACaa-GCGGCCGGugcac -5'
8957 5' -56.4 NC_002512.2 + 72797 0.7 0.798405
Target:  5'- cGGGACGGgcccgcCGUGggCGCCGGCgACc-- -3'
miRNA:   3'- -CCCUGCU------GUACaaGCGGCCGgUGcac -5'
8957 5' -56.4 NC_002512.2 + 9749 0.7 0.839609
Target:  5'- gGGGGCGGCGga---GCCGGacccgccgccCCGCGUGg -3'
miRNA:   3'- -CCCUGCUGUacaagCGGCC----------GGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 8985 0.69 0.847356
Target:  5'- uGGACGAacuCGUagaggUCGUCGGCCACGaUGg -3'
miRNA:   3'- cCCUGCU---GUAca---AGCGGCCGGUGC-AC- -5'
8957 5' -56.4 NC_002512.2 + 119025 0.69 0.847356
Target:  5'- uGGugGACGg----GCCGGCCGuCGUGg -3'
miRNA:   3'- cCCugCUGUacaagCGGCCGGU-GCAC- -5'
8957 5' -56.4 NC_002512.2 + 155381 0.69 0.847356
Target:  5'- cGGGGCGGCGg---CGCCGGCgGgCGa- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCGgU-GCac -5'
8957 5' -56.4 NC_002512.2 + 151869 0.69 0.862304
Target:  5'- cGGAUGACucGUGggCGCCGGCgaucCGCGg- -3'
miRNA:   3'- cCCUGCUG--UACaaGCGGCCG----GUGCac -5'
8957 5' -56.4 NC_002512.2 + 4580 0.69 0.873715
Target:  5'- uGGGGCGGCGgaggaggcggCGCCgcgGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGUacaa------GCGG---CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 104700 0.69 0.876489
Target:  5'- uGGACGGCcaccUGgaagggGCCGGCCACGa- -3'
miRNA:   3'- cCCUGCUGu---ACaag---CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 8858 0.72 0.735143
Target:  5'- cGGGCGGCAccccgUUGgUGGCCGCGUGg -3'
miRNA:   3'- cCCUGCUGUaca--AGCgGCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 12086 0.72 0.724763
Target:  5'- cGGGACGGCGacgccgauccgccaGCCGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGUacaag---------CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 133800 0.72 0.706632
Target:  5'- gGGGACGACGgucgCGCCGGgUGCGg- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCgGUGCac -5'
8957 5' -56.4 NC_002512.2 + 45415 0.74 0.59921
Target:  5'- cGGGcgcuCGACGgcggCGCCGGCCGCGg- -3'
miRNA:   3'- -CCCu---GCUGUacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 68174 0.74 0.609002
Target:  5'- -aGACGAUcccgUCGCCGGCCGCGUc -3'
miRNA:   3'- ccCUGCUGuacaAGCGGCCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 66442 0.74 0.609002
Target:  5'- -cGACGACAcGUcucuccucCGCCGGCUACGUGa -3'
miRNA:   3'- ccCUGCUGUaCAa-------GCGGCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 118080 0.74 0.609002
Target:  5'- gGGGGCGGCuccggCGCCGGCgGCGa- -3'
miRNA:   3'- -CCCUGCUGuacaaGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 64886 0.74 0.628624
Target:  5'- gGGGACGGCcucucCGUCGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGuacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 116709 0.72 0.697002
Target:  5'- cGGACGGCGa---CGCCGGUCGCGUc -3'
miRNA:   3'- cCCUGCUGUacaaGCGGCCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 90904 0.72 0.697002
Target:  5'- cGGGACGGCcgGacUGgCGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGuaCaaGCgGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 94723 0.72 0.706632
Target:  5'- cGGGGCG-CAggcGUUCGCUGGCCAg--- -3'
miRNA:   3'- -CCCUGCuGUa--CAAGCGGCCGGUgcac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.