miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 190355 0.66 0.948126
Target:  5'- -cGACGACggGggCGUCGGCC-CGg- -3'
miRNA:   3'- ccCUGCUGuaCaaGCGGCCGGuGCac -5'
8957 5' -56.4 NC_002512.2 + 141265 0.66 0.948126
Target:  5'- -cGACGACcacGUUcgucccgaCGCCGGCCGCGc- -3'
miRNA:   3'- ccCUGCUGua-CAA--------GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 57860 0.66 0.948126
Target:  5'- uGGGGCG-CAUGc-UGCCGGCCGg--- -3'
miRNA:   3'- -CCCUGCuGUACaaGCGGCCGGUgcac -5'
8957 5' -56.4 NC_002512.2 + 77198 0.66 0.947715
Target:  5'- gGGGACgcgacgaGACcgGgcCGCCGGCCccaguACGUu -3'
miRNA:   3'- -CCCUG-------CUGuaCaaGCGGCCGG-----UGCAc -5'
8957 5' -56.4 NC_002512.2 + 205583 0.67 0.943922
Target:  5'- gGGGACG-CA-GUUCGCCccGCCGCu-- -3'
miRNA:   3'- -CCCUGCuGUaCAAGCGGc-CGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 145047 0.67 0.943922
Target:  5'- cGGGACGGCcgGga-GaUCGaCCACGUGg -3'
miRNA:   3'- -CCCUGCUGuaCaagC-GGCcGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 147629 0.67 0.943922
Target:  5'- gGGGGCGACGacgacggCGgCGGCCGCu-- -3'
miRNA:   3'- -CCCUGCUGUacaa---GCgGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 20741 0.67 0.939501
Target:  5'- -cGACGACGUGcUCGCCGucgucucCCACGa- -3'
miRNA:   3'- ccCUGCUGUACaAGCGGCc------GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 105690 0.67 0.939501
Target:  5'- cGGugGugAUGUgcgUGCCGaacGCCGCGc- -3'
miRNA:   3'- cCCugCugUACAa--GCGGC---CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 89688 0.67 0.939501
Target:  5'- cGGGGCGAgAUGUacggucgugUCGCCGaaCGgGUGg -3'
miRNA:   3'- -CCCUGCUgUACA---------AGCGGCcgGUgCAC- -5'
8957 5' -56.4 NC_002512.2 + 166451 0.67 0.939501
Target:  5'- gGGGGCGACGg---CGCCGGgCuCGa- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCgGuGCac -5'
8957 5' -56.4 NC_002512.2 + 58022 0.67 0.939047
Target:  5'- aGGACGGCGUuc-CGCCcccucccGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGUAcaaGCGG-------CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 87846 0.67 0.939047
Target:  5'- cGGGcccucGCGGCGgg-UCGCCGGCCcccggccGCGg- -3'
miRNA:   3'- -CCC-----UGCUGUacaAGCGGCCGG-------UGCac -5'
8957 5' -56.4 NC_002512.2 + 119379 0.67 0.934862
Target:  5'- uGGACGACGcGgcgGCCcugcugcagGGCCGCGUGc -3'
miRNA:   3'- cCCUGCUGUaCaagCGG---------CCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 151352 0.67 0.934862
Target:  5'- -cGGCGcCAUGUUgccucaagauggCGCCGGCCgaaaACGUGc -3'
miRNA:   3'- ccCUGCuGUACAA------------GCGGCCGG----UGCAC- -5'
8957 5' -56.4 NC_002512.2 + 124617 0.67 0.934862
Target:  5'- cGGAcgcCGAgAUG-UCGCUGGCCcUGUGg -3'
miRNA:   3'- cCCU---GCUgUACaAGCGGCCGGuGCAC- -5'
8957 5' -56.4 NC_002512.2 + 153969 0.67 0.930003
Target:  5'- cGGGGucCGGCGg---CGCCGGCgGCGg- -3'
miRNA:   3'- -CCCU--GCUGUacaaGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 130889 0.67 0.930003
Target:  5'- cGGGGCcGCGcagagGCCGGCCAuCGUGg -3'
miRNA:   3'- -CCCUGcUGUacaagCGGCCGGU-GCAC- -5'
8957 5' -56.4 NC_002512.2 + 228100 0.67 0.930003
Target:  5'- cGGGAgCGAgGaGggCGUCGGCCGCa-- -3'
miRNA:   3'- -CCCU-GCUgUaCaaGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 138956 0.67 0.924925
Target:  5'- -cGGCGGCGgccgCGCCGGCCcCGUu -3'
miRNA:   3'- ccCUGCUGUacaaGCGGCCGGuGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.