miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 94685 0.68 0.506539
Target:  5'- cGGCGCG-CaGCUGCCCUcgugcgacaGCUCGcGGUGc -3'
miRNA:   3'- -UCGCGCaG-CGGCGGGA---------CGAGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 103225 0.69 0.457724
Target:  5'- cGGCucGCGUCGCCGCCCgucgacgGCcgCGGcgagggcauggaggaGGUGa -3'
miRNA:   3'- -UCG--CGCAGCGGCGGGa------CGa-GCC---------------CCAC- -5'
8958 3' -64.8 NC_002512.2 + 10761 0.69 0.462836
Target:  5'- gAGCGCGUCGUCgGCCCcGC-CGcGGUa -3'
miRNA:   3'- -UCGCGCAGCGG-CGGGaCGaGCcCCAc -5'
8958 3' -64.8 NC_002512.2 + 21512 0.68 0.468838
Target:  5'- cAGCGUcgggccaccucgucGUCGaaaCGCaCCUGCUCcucgGGGGUGa -3'
miRNA:   3'- -UCGCG--------------CAGCg--GCG-GGACGAG----CCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 75101 0.68 0.48009
Target:  5'- gGGCucgaCGUCGCCGCCUgGCggacaCGGGGa- -3'
miRNA:   3'- -UCGc---GCAGCGGCGGGaCGa----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 12790 0.68 0.487956
Target:  5'- cGGCGCcccCGCUGCCCcugcggaUGCUCGGGcGg- -3'
miRNA:   3'- -UCGCGca-GCGGCGGG-------ACGAGCCC-Cac -5'
8958 3' -64.8 NC_002512.2 + 99102 0.68 0.488834
Target:  5'- uGCGCGUCgGCgGCCCUcCUCGuGGUc -3'
miRNA:   3'- uCGCGCAG-CGgCGGGAcGAGCcCCAc -5'
8958 3' -64.8 NC_002512.2 + 141911 0.68 0.497651
Target:  5'- cGGgGCGcCGCgGCCCcGa-CGGGGUGa -3'
miRNA:   3'- -UCgCGCaGCGgCGGGaCgaGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 74624 0.68 0.506539
Target:  5'- gAGCGCGagacCGCCGCgCgacgGCcCGGGGg- -3'
miRNA:   3'- -UCGCGCa---GCGGCGgGa---CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 63679 0.69 0.453487
Target:  5'- cGCGCGgcccuccUCGCCGCCCaagaagGCcaCGGGGa- -3'
miRNA:   3'- uCGCGC-------AGCGGCGGGa-----CGa-GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 82015 0.7 0.413139
Target:  5'- cGGCGaGcCGUCGCCCgGgUCGGGGUc -3'
miRNA:   3'- -UCGCgCaGCGGCGGGaCgAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 90024 0.7 0.392649
Target:  5'- uGuCG-GUCGCCGUCCUguguggccuggccucGCUCGGGGUc -3'
miRNA:   3'- uC-GCgCAGCGGCGGGA---------------CGAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 139257 0.74 0.229146
Target:  5'- cGGCGcCGggucgCGCCGCCCgGCgcgCGGGGg- -3'
miRNA:   3'- -UCGC-GCa----GCGGCGGGaCGa--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 113711 0.72 0.317568
Target:  5'- cAGCGCGUgGaacuCGCCCggcgccagcgGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCAgCg---GCGGGa---------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 129358 0.71 0.338069
Target:  5'- gGGCaGCGUCGUCGCCuuCUGuCUCGugcGGGUGc -3'
miRNA:   3'- -UCG-CGCAGCGGCGG--GAC-GAGC---CCCAC- -5'
8958 3' -64.8 NC_002512.2 + 30426 0.71 0.352261
Target:  5'- gGGCGuCGUCGCgGCCCUGaaCGcGGGc- -3'
miRNA:   3'- -UCGC-GCAGCGgCGGGACgaGC-CCCac -5'
8958 3' -64.8 NC_002512.2 + 70825 0.71 0.352261
Target:  5'- gGGCGCGUCGuCCGCCUcGCccCGGGa-- -3'
miRNA:   3'- -UCGCGCAGC-GGCGGGaCGa-GCCCcac -5'
8958 3' -64.8 NC_002512.2 + 8151 0.71 0.359515
Target:  5'- cGGCGCGU--CCGCCaggcGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCAgcGGCGGga--CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 10431 0.7 0.381893
Target:  5'- cGCGuCGUCGCCGUCggGCaCGGGGg- -3'
miRNA:   3'- uCGC-GCAGCGGCGGgaCGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 138005 0.7 0.386479
Target:  5'- cGcCGCGcCGCCGCCCgcgccggacggcgGcCUCGGGGg- -3'
miRNA:   3'- uC-GCGCaGCGGCGGGa------------C-GAGCCCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.