miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 95752 0.66 0.589064
Target:  5'- gGGaCGCG-CGCCGCgacggccgCCUGgaCGGGGg- -3'
miRNA:   3'- -UC-GCGCaGCGGCG--------GGACgaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 26732 0.67 0.579723
Target:  5'- uGCGCGUCGCCggcGCCgCUGUaCGccacGGUGa -3'
miRNA:   3'- uCGCGCAGCGG---CGG-GACGaGCc---CCAC- -5'
8958 3' -64.8 NC_002512.2 + 4162 0.67 0.579723
Target:  5'- gAGCGaGUCGCCGCg--GCUCGcGGGc- -3'
miRNA:   3'- -UCGCgCAGCGGCGggaCGAGC-CCCac -5'
8958 3' -64.8 NC_002512.2 + 223221 0.67 0.579723
Target:  5'- gAGCGCGUC-CCGgCCgGCUCGGu--- -3'
miRNA:   3'- -UCGCGCAGcGGCgGGaCGAGCCccac -5'
8958 3' -64.8 NC_002512.2 + 102797 0.67 0.570413
Target:  5'- cGC-CGcCGCCGCCCUccGCUCcGGGa- -3'
miRNA:   3'- uCGcGCaGCGGCGGGA--CGAGcCCCac -5'
8958 3' -64.8 NC_002512.2 + 62720 0.67 0.570413
Target:  5'- cAGCGCGUCGCgGUCgacgGCcucgCGGGGc- -3'
miRNA:   3'- -UCGCGCAGCGgCGGga--CGa---GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 104472 0.67 0.570413
Target:  5'- uGGUGuCGUCGuUCGCCCUcggGCcCGGGGa- -3'
miRNA:   3'- -UCGC-GCAGC-GGCGGGA---CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 49721 0.67 0.570413
Target:  5'- -aCGCGUCGUa--CCUGCUCGGGa-- -3'
miRNA:   3'- ucGCGCAGCGgcgGGACGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 218106 0.67 0.570413
Target:  5'- cGgGCGUCG-CGCCCggggucGCUCGGGu-- -3'
miRNA:   3'- uCgCGCAGCgGCGGGa-----CGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 97338 0.67 0.5667
Target:  5'- gAGgGCGgagaggccgacggCGCCGCCC-GCggagCGGGGa- -3'
miRNA:   3'- -UCgCGCa------------GCGGCGGGaCGa---GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 96651 0.67 0.561141
Target:  5'- cGGgGCGcCGCCGCCCUcccguccucGCUgGGcGGa- -3'
miRNA:   3'- -UCgCGCaGCGGCGGGA---------CGAgCC-CCac -5'
8958 3' -64.8 NC_002512.2 + 45294 0.67 0.55191
Target:  5'- cGCGgGUcggacggacCGCCGCCCUGCcggccCGcGGGUc -3'
miRNA:   3'- uCGCgCA---------GCGGCGGGACGa----GC-CCCAc -5'
8958 3' -64.8 NC_002512.2 + 169081 0.67 0.54823
Target:  5'- cGGCgGCGUCGCgGCCC-GCguccucguccucgCGGGGc- -3'
miRNA:   3'- -UCG-CGCAGCGgCGGGaCGa------------GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 215155 0.67 0.542725
Target:  5'- aGGCGaCGagcaccUgGCCGUCCugcUGCUCGGGGa- -3'
miRNA:   3'- -UCGC-GC------AgCGGCGGG---ACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 220370 0.67 0.542725
Target:  5'- uGGC-CGcCGCCGCCgUGCU-GGGGc- -3'
miRNA:   3'- -UCGcGCaGCGGCGGgACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 118215 0.67 0.542725
Target:  5'- uGGUGCGaCGggGCCCucgUGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCaGCggCGGG---ACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 193845 0.67 0.534503
Target:  5'- cGGgGCGUCcCCGCUCUGCccaguacaucggacgCGGcGGUGg -3'
miRNA:   3'- -UCgCGCAGcGGCGGGACGa--------------GCC-CCAC- -5'
8958 3' -64.8 NC_002512.2 + 108418 0.67 0.533592
Target:  5'- uGCuCGUcugCGCCGCCCgggGC-CGGGGg- -3'
miRNA:   3'- uCGcGCA---GCGGCGGGa--CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 119932 0.67 0.533592
Target:  5'- gAGCGCGgCGUCGCCCccGCaCGcGGUGg -3'
miRNA:   3'- -UCGCGCaGCGGCGGGa-CGaGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 15305 0.67 0.533592
Target:  5'- gAGCGUcUCGUCGCCCagGCgggaGGGGa- -3'
miRNA:   3'- -UCGCGcAGCGGCGGGa-CGag--CCCCac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.