miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 211222 1.14 0.005859
Target:  5'- uUCCUCUCCGACGAGUACUACGACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGCUCAUGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 69015 0.79 0.571009
Target:  5'- cCCUCcgCCGACGuGUccgccccuCUGCGACUGCg -3'
miRNA:   3'- aGGAGa-GGCUGCuCAu-------GAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 172575 0.76 0.750265
Target:  5'- uUCCUCcgcgCCcGCGAGUACgagacCGGCUGCg -3'
miRNA:   3'- -AGGAGa---GGcUGCUCAUGau---GCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 181563 0.74 0.813881
Target:  5'- gUCCUCgUUCGugGGGUccguCUGCGGCgGCa -3'
miRNA:   3'- -AGGAG-AGGCugCUCAu---GAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 207588 0.73 0.857742
Target:  5'- cCCUCUCCcuggccugcgacggcGGCGGcUGCUGCGGCgGCg -3'
miRNA:   3'- aGGAGAGG---------------CUGCUcAUGAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 99798 0.73 0.869671
Target:  5'- uUCaCUCggCCGuCGGGUACUACGAgCUGg -3'
miRNA:   3'- -AG-GAGa-GGCuGCUCAUGAUGCU-GACg -5'
8958 5' -52.3 NC_002512.2 + 221867 0.72 0.915376
Target:  5'- aCCUCUCgGAgCGGGUGggGCGAguuCUGCu -3'
miRNA:   3'- aGGAGAGgCU-GCUCAUgaUGCU---GACG- -5'
8958 5' -52.3 NC_002512.2 + 4733 0.72 0.915376
Target:  5'- gCCg--CCGACGAcUGCgACGGCUGCu -3'
miRNA:   3'- aGGagaGGCUGCUcAUGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 73067 0.71 0.920998
Target:  5'- gCCUCgcacagguugCCGAcCGAGUGC-ACGACgUGCu -3'
miRNA:   3'- aGGAGa---------GGCU-GCUCAUGaUGCUG-ACG- -5'
8958 5' -52.3 NC_002512.2 + 50755 0.71 0.926388
Target:  5'- gCCUCUCCGGCGAGcuggaucacGCgauCGAC-GCg -3'
miRNA:   3'- aGGAGAGGCUGCUCa--------UGau-GCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 205132 0.71 0.931545
Target:  5'- uUCgUCUCCGACGGGaagACggucACG-CUGCc -3'
miRNA:   3'- -AGgAGAGGCUGCUCa--UGa---UGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 201674 0.71 0.936469
Target:  5'- uUCCuUCUUCGGCGAGg---GCGGCcGCg -3'
miRNA:   3'- -AGG-AGAGGCUGCUCaugaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 105337 0.71 0.941162
Target:  5'- cUCCUCgCCGACGAGguaggaguugGCguagAUGACgGCg -3'
miRNA:   3'- -AGGAGaGGCUGCUCa---------UGa---UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 122172 0.7 0.945624
Target:  5'- aCCUCUgCGACcuGcGCcACGACUGCg -3'
miRNA:   3'- aGGAGAgGCUGcuCaUGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 145345 0.7 0.953476
Target:  5'- gCCUCgccgcgCCGcccgacgccggcuACGAGgGCUACGACUGg -3'
miRNA:   3'- aGGAGa-----GGC-------------UGCUCaUGAUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 128258 0.7 0.957284
Target:  5'- cUCCUCgUCCGACGGGUccgccgucACccagauccucucgUGCGGgUGCa -3'
miRNA:   3'- -AGGAG-AGGCUGCUCA--------UG-------------AUGCUgACG- -5'
8958 5' -52.3 NC_002512.2 + 34832 0.7 0.961221
Target:  5'- aUUCUCUCCGACGcucauaaacGGUcgAC-ACGcACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGC---------UCA--UGaUGC-UGACG- -5'
8958 5' -52.3 NC_002512.2 + 225872 0.69 0.964575
Target:  5'- gUCUCUCCGACGcGacucCUGCGAC-GCc -3'
miRNA:   3'- aGGAGAGGCUGCuCau--GAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 128848 0.69 0.967416
Target:  5'- aCCgCUCgGGCGccgcgcgggcccuGGUGCUGCGcCUGCu -3'
miRNA:   3'- aGGaGAGgCUGC-------------UCAUGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 161829 0.69 0.967416
Target:  5'- cCCUCugcUCCGACGAG-GCUuccggacACGGCgucgGCg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaUGA-------UGCUGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.