miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 196936 0.66 0.995813
Target:  5'- gUCUC-CCGGCGuGUugUGCcgaauuGCUGCu -3'
miRNA:   3'- aGGAGaGGCUGCuCAugAUGc-----UGACG- -5'
8958 5' -52.3 NC_002512.2 + 54898 0.67 0.989092
Target:  5'- aUCCUg-CCGAaggaGGUGCUGCG-CUGCc -3'
miRNA:   3'- -AGGAgaGGCUgc--UCAUGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 115062 0.67 0.990381
Target:  5'- -gCUCUUCucCGAGUACUugGACa-- -3'
miRNA:   3'- agGAGAGGcuGCUCAUGAugCUGacg -5'
8958 5' -52.3 NC_002512.2 + 115983 0.67 0.991548
Target:  5'- gCCUCgUCGACGucuuCUGCGcCUGCa -3'
miRNA:   3'- aGGAGaGGCUGCucauGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 48162 0.67 0.993894
Target:  5'- aUCUUCgCCacgcguuacgacgagGACGAGUucCUGCGACUGa -3'
miRNA:   3'- -AGGAGaGG---------------CUGCUCAu-GAUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 125867 0.66 0.99439
Target:  5'- cCCUCuggUCCGGCGGGc---ACGGCUGg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaugaUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 9720 0.66 0.995144
Target:  5'- cUCCUC-CCGACGcAGaGC-ACGAC-GCc -3'
miRNA:   3'- -AGGAGaGGCUGC-UCaUGaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 104938 0.66 0.995144
Target:  5'- cUCCUCgUCCGGCGucgGC-GCGGCgccgGCc -3'
miRNA:   3'- -AGGAG-AGGCUGCucaUGaUGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 129373 0.66 0.995144
Target:  5'- cUUCUgUCuCGuGCGGGUGCUcgACGACcGCg -3'
miRNA:   3'- -AGGAgAG-GC-UGCUCAUGA--UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 40638 0.67 0.989092
Target:  5'- aCCUCUccCCGACGGugACguccGCGACgGCg -3'
miRNA:   3'- aGGAGA--GGCUGCUcaUGa---UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 116109 0.67 0.989092
Target:  5'- aCCUCaCCGugccCGAGaucgACGACUGCg -3'
miRNA:   3'- aGGAGaGGCu---GCUCaugaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 3357 0.68 0.982547
Target:  5'- uUCCUC-CCGAuCGAGg---ACGGCgGCa -3'
miRNA:   3'- -AGGAGaGGCU-GCUCaugaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 99798 0.73 0.869671
Target:  5'- uUCaCUCggCCGuCGGGUACUACGAgCUGg -3'
miRNA:   3'- -AG-GAGa-GGCuGCUCAUGAUGCU-GACg -5'
8958 5' -52.3 NC_002512.2 + 4733 0.72 0.915376
Target:  5'- gCCg--CCGACGAcUGCgACGGCUGCu -3'
miRNA:   3'- aGGagaGGCUGCUcAUGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 73067 0.71 0.920998
Target:  5'- gCCUCgcacagguugCCGAcCGAGUGC-ACGACgUGCu -3'
miRNA:   3'- aGGAGa---------GGCU-GCUCAUGaUGCUG-ACG- -5'
8958 5' -52.3 NC_002512.2 + 50755 0.71 0.926388
Target:  5'- gCCUCUCCGGCGAGcuggaucacGCgauCGAC-GCg -3'
miRNA:   3'- aGGAGAGGCUGCUCa--------UGau-GCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 122172 0.7 0.945624
Target:  5'- aCCUCUgCGACcuGcGCcACGACUGCg -3'
miRNA:   3'- aGGAGAgGCUGcuCaUGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 128258 0.7 0.957284
Target:  5'- cUCCUCgUCCGACGGGUccgccgucACccagauccucucgUGCGGgUGCa -3'
miRNA:   3'- -AGGAG-AGGCUGCUCA--------UG-------------AUGCUgACG- -5'
8958 5' -52.3 NC_002512.2 + 155973 0.69 0.967721
Target:  5'- gUUUCUCCGAC-AGcGCUugGACcGCg -3'
miRNA:   3'- aGGAGAGGCUGcUCaUGAugCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 65082 0.69 0.978332
Target:  5'- -gCUCUCCagucccgucGCGAGcGCUugGugUGCa -3'
miRNA:   3'- agGAGAGGc--------UGCUCaUGAugCugACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.