miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 196826 0.67 0.991548
Target:  5'- uUCUUCUgCGACGG--GCUGCGGCg-- -3'
miRNA:   3'- -AGGAGAgGCUGCUcaUGAUGCUGacg -5'
8958 5' -52.3 NC_002512.2 + 115062 0.67 0.990381
Target:  5'- -gCUCUUCucCGAGUACUugGACa-- -3'
miRNA:   3'- agGAGAGGcuGCUCAUGAugCUGacg -5'
8958 5' -52.3 NC_002512.2 + 149876 0.67 0.989092
Target:  5'- gCCUCgUCCGGCuccgGCUGCcGCUGCc -3'
miRNA:   3'- aGGAG-AGGCUGcucaUGAUGcUGACG- -5'
8958 5' -52.3 NC_002512.2 + 116109 0.67 0.989092
Target:  5'- aCCUCaCCGugccCGAGaucgACGACUGCg -3'
miRNA:   3'- aGGAGaGGCu---GCUCaugaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 40638 0.67 0.989092
Target:  5'- aCCUCUccCCGACGGugACguccGCGACgGCg -3'
miRNA:   3'- aGGAGA--GGCUGCUcaUGa---UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 54898 0.67 0.989092
Target:  5'- aUCCUg-CCGAaggaGGUGCUGCG-CUGCc -3'
miRNA:   3'- -AGGAgaGGCUgc--UCAUGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 179833 0.67 0.988398
Target:  5'- cCCUCUCCGucagcaccagcccccGCGuGUGCgcgcccaccgucacgACGACgUGCa -3'
miRNA:   3'- aGGAGAGGC---------------UGCuCAUGa--------------UGCUG-ACG- -5'
8958 5' -52.3 NC_002512.2 + 124325 0.68 0.987672
Target:  5'- gCCg---CGGCGGacGUGCUGCGGCUGUa -3'
miRNA:   3'- aGGagagGCUGCU--CAUGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 3357 0.68 0.982547
Target:  5'- uUCCUC-CCGAuCGAGg---ACGGCgGCa -3'
miRNA:   3'- -AGGAGaGGCU-GCUCaugaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 138151 0.68 0.982352
Target:  5'- uUCUUCgggCUGACGAacuGUccgcacccgccggGCUGCGugUGCa -3'
miRNA:   3'- -AGGAGa--GGCUGCU---CA-------------UGAUGCugACG- -5'
8958 5' -52.3 NC_002512.2 + 150025 0.68 0.980525
Target:  5'- uUCCUcCUCCGAggaCGAGgggGCcggggACGACgggGCg -3'
miRNA:   3'- -AGGA-GAGGCU---GCUCa--UGa----UGCUGa--CG- -5'
8958 5' -52.3 NC_002512.2 + 65082 0.69 0.978332
Target:  5'- -gCUCUCCagucccgucGCGAGcGCUugGugUGCa -3'
miRNA:   3'- agGAGAGGc--------UGCUCaUGAugCugACG- -5'
8958 5' -52.3 NC_002512.2 + 210607 0.69 0.975962
Target:  5'- gUCCUCUCCGAUcaccuGGUccgGCUGgGcaACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGc----UCA---UGAUgC--UGACG- -5'
8958 5' -52.3 NC_002512.2 + 190108 0.69 0.975715
Target:  5'- aCCUCaUCCGGCGcuuccacGGcaGCUGCGuGCUGCu -3'
miRNA:   3'- aGGAG-AGGCUGC-------UCa-UGAUGC-UGACG- -5'
8958 5' -52.3 NC_002512.2 + 189595 0.69 0.970663
Target:  5'- gUCCUCgggaCGACGuucGUGCgcgGCGGCcGCa -3'
miRNA:   3'- -AGGAGag--GCUGCu--CAUGa--UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 209625 0.69 0.970663
Target:  5'- aCCUgCggCCgGACGAGgacgACgACGGCUGCg -3'
miRNA:   3'- aGGA-Ga-GG-CUGCUCa---UGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 145681 0.69 0.970663
Target:  5'- gCCUgUCCgcgGACGAGUgGCUGCGccGCUGg -3'
miRNA:   3'- aGGAgAGG---CUGCUCA-UGAUGC--UGACg -5'
8958 5' -52.3 NC_002512.2 + 155973 0.69 0.967721
Target:  5'- gUUUCUCCGAC-AGcGCUugGACcGCg -3'
miRNA:   3'- aGGAGAGGCUGcUCaUGAugCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 161829 0.69 0.967416
Target:  5'- cCCUCugcUCCGACGAG-GCUuccggacACGGCgucgGCg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaUGA-------UGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 128848 0.69 0.967416
Target:  5'- aCCgCUCgGGCGccgcgcgggcccuGGUGCUGCGcCUGCu -3'
miRNA:   3'- aGGaGAGgCUGC-------------UCAUGAUGCuGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.