miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 6089 0.67 0.600486
Target:  5'- gGCGGUcgccgccgaCGUCCCCgGCgACgUCCGgUCc -3'
miRNA:   3'- -CGCCG---------GCAGGGGgCGaUGgAGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 79567 0.67 0.600486
Target:  5'- cGCGG-CGUCCucgccgccgguCUCGCU-CCUCCGcCUCu -3'
miRNA:   3'- -CGCCgGCAGG-----------GGGCGAuGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 25223 0.67 0.608961
Target:  5'- aGCGaGCCGccggcgaUCCCCCGCgcgucGCCgucCCGgUCc -3'
miRNA:   3'- -CGC-CGGC-------AGGGGGCGa----UGGa--GGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 69424 0.67 0.609904
Target:  5'- uGCGcUCGUgCCCCGCgaaacgGCCUUCGCcCa -3'
miRNA:   3'- -CGCcGGCAgGGGGCGa-----UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 80141 0.67 0.609904
Target:  5'- cGgGGUCGUCCCCCuCgucguCCUCCucGCUg -3'
miRNA:   3'- -CgCCGGCAGGGGGcGau---GGAGG--CGAg -5'
8959 3' -63.6 NC_002512.2 + 5989 0.67 0.609904
Target:  5'- cCGcGCCG-CUCCCGCU-CCUCCucCUCg -3'
miRNA:   3'- cGC-CGGCaGGGGGCGAuGGAGGc-GAG- -5'
8959 3' -63.6 NC_002512.2 + 224720 0.67 0.600486
Target:  5'- cCGGCCGcCgCCCCGgUcgcGCCgcugCCGUUCu -3'
miRNA:   3'- cGCCGGCaG-GGGGCgA---UGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 129797 0.67 0.609904
Target:  5'- cCGGCaGUCCCCC-CUuccGCCUCUuCUCg -3'
miRNA:   3'- cGCCGgCAGGGGGcGA---UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 129587 0.67 0.619336
Target:  5'- uCGGCCccgucgCCCCCGaCgaacucGCC-CCGCUCg -3'
miRNA:   3'- cGCCGGca----GGGGGC-Ga-----UGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 133598 0.68 0.572373
Target:  5'- aGCgGGCCGgCCuCCUGCggACCUaCgGCUCg -3'
miRNA:   3'- -CG-CCGGCaGG-GGGCGa-UGGA-GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 223947 0.68 0.563067
Target:  5'- cGCGGCUGUgaCCCCUGCgucCCUaUCGCa- -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGau-GGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 70895 0.68 0.563067
Target:  5'- cGgGGCCGccgCCUCCGCcccgccgugGCCgccgaaCCGCUCg -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--------UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 134251 0.68 0.563067
Target:  5'- gGCGGCCGagccgCCCCCug-GCCUUCGUcgUCc -3'
miRNA:   3'- -CGCCGGCa----GGGGGcgaUGGAGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 37239 0.68 0.563067
Target:  5'- gGCaGCCG-CCCCCGCgaGCCguugCCGUa- -3'
miRNA:   3'- -CGcCGGCaGGGGGCGa-UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 33475 0.68 0.563067
Target:  5'- cCGGCCGccgcCCCCCGCguCC-CCGCg- -3'
miRNA:   3'- cGCCGGCa---GGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 102647 0.68 0.560284
Target:  5'- cCGGCCGUCgCCUCGgUcgugcccgcgucucACCUCC-CUCa -3'
miRNA:   3'- cGCCGGCAG-GGGGCgA--------------UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 4053 0.68 0.573306
Target:  5'- aGCGGCuCGaUCCCCCGCggcucgaggucccagGCCacccggCCGCcCg -3'
miRNA:   3'- -CGCCG-GC-AGGGGGCGa--------------UGGa-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 133257 0.68 0.578909
Target:  5'- cCGGUCGcgguuuccucgcccUCCCCCGCgu-CUCCGCg- -3'
miRNA:   3'- cGCCGGC--------------AGGGGGCGaugGAGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.