miRNA display CGI


Results 121 - 140 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 70895 0.68 0.563067
Target:  5'- cGgGGCCGccgCCUCCGCcccgccgugGCCgccgaaCCGCUCg -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--------UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 102647 0.68 0.560284
Target:  5'- cCGGCCGUCgCCUCGgUcgugcccgcgucucACCUCC-CUCa -3'
miRNA:   3'- cGCCGGCAG-GGGGCgA--------------UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 5348 0.68 0.553802
Target:  5'- -aGGCCaugGUCCCCCGggACCugugguccUCCgGCUCu -3'
miRNA:   3'- cgCCGG---CAGGGGGCgaUGG--------AGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 128426 0.68 0.544584
Target:  5'- uCGGCCGguguccaccCCCCCGCUcucggcgucGCCgcgCCGC-Cg -3'
miRNA:   3'- cGCCGGCa--------GGGGGCGA---------UGGa--GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 25120 0.68 0.544584
Target:  5'- cCGGUCGUCCCCgCGCcccagGCCgggaUCGCUg -3'
miRNA:   3'- cGCCGGCAGGGG-GCGa----UGGa---GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 196196 0.68 0.572373
Target:  5'- aCGGCCGggUCCCUgGCgaGCCUCCGg-- -3'
miRNA:   3'- cGCCGGC--AGGGGgCGa-UGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 134251 0.68 0.563067
Target:  5'- gGCGGCCGagccgCCCCCug-GCCUUCGUcgUCc -3'
miRNA:   3'- -CGCCGGCa----GGGGGcgaUGGAGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 95651 0.68 0.581715
Target:  5'- uCGGCCGcCCCCgGCacaGCCUCuCGUg- -3'
miRNA:   3'- cGCCGGCaGGGGgCGa--UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 107955 0.68 0.581715
Target:  5'- cGCGGguCCGggaCCgCCGCcGCCUcgucCCGCUCg -3'
miRNA:   3'- -CGCC--GGCa--GGgGGCGaUGGA----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146974 0.68 0.581715
Target:  5'- cGCGGCCGagaCUUCCGCUGCCUgaccaCCGa-- -3'
miRNA:   3'- -CGCCGGCa--GGGGGCGAUGGA-----GGCgag -5'
8959 3' -63.6 NC_002512.2 + 223947 0.68 0.563067
Target:  5'- cGCGGCUGUgaCCCCUGCgucCCUaUCGCa- -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGau-GGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 229721 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 318 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 219373 0.68 0.591088
Target:  5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3'
miRNA:   3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 198727 0.68 0.591088
Target:  5'- gGCGGUgCGUCUCCCGg-GCCaggUCCGCg- -3'
miRNA:   3'- -CGCCG-GCAGGGGGCgaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 158880 0.68 0.581715
Target:  5'- gGCGGCgGcCCCCCGU--CCUUCGUc- -3'
miRNA:   3'- -CGCCGgCaGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 222130 0.68 0.581715
Target:  5'- cGCGGCCGacuaccgCCCCgGCUccGCCcccgaggaCCGCUa -3'
miRNA:   3'- -CGCCGGCa------GGGGgCGA--UGGa-------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 37239 0.68 0.563067
Target:  5'- gGCaGCCG-CCCCCGCgaGCCguugCCGUa- -3'
miRNA:   3'- -CGcCGGCaGGGGGCGa-UGGa---GGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.