miRNA display CGI


Results 141 - 160 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 133598 0.68 0.572373
Target:  5'- aGCgGGCCGgCCuCCUGCggACCUaCgGCUCg -3'
miRNA:   3'- -CG-CCGGCaGG-GGGCGa-UGGA-GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 4053 0.68 0.573306
Target:  5'- aGCGGCuCGaUCCCCCGCggcucgaggucccagGCCacccggCCGCcCg -3'
miRNA:   3'- -CGCCG-GC-AGGGGGCGa--------------UGGa-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 133257 0.68 0.578909
Target:  5'- cCGGUCGcgguuuccucgcccUCCCCCGCgu-CUCCGCg- -3'
miRNA:   3'- cGCCGGC--------------AGGGGGCGaugGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 130932 0.68 0.581715
Target:  5'- uCGGCCcgGUUCCCCGCccgACUgcaUCCgGCUCu -3'
miRNA:   3'- cGCCGG--CAGGGGGCGa--UGG---AGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 146974 0.68 0.581715
Target:  5'- cGCGGCCGagaCUUCCGCUGCCUgaccaCCGa-- -3'
miRNA:   3'- -CGCCGGCa--GGGGGCGAUGGA-----GGCgag -5'
8959 3' -63.6 NC_002512.2 + 216211 0.68 0.553802
Target:  5'- cGCGGCCGUCgCCUCGUccgggaGCUggagCCGCg- -3'
miRNA:   3'- -CGCCGGCAG-GGGGCGa-----UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 154835 0.68 0.553802
Target:  5'- cCGGUC-UCCCCCGC--CCUCCGUc- -3'
miRNA:   3'- cGCCGGcAGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 120530 0.68 0.553802
Target:  5'- cGCGGCUuUCCCCCGgcGgCUCC-CUCg -3'
miRNA:   3'- -CGCCGGcAGGGGGCgaUgGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 213002 0.68 0.552878
Target:  5'- cGCGGCCGUCgggCCCGggGCCcucucgaggugcgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGg--GGGCgaUGG-------------AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 109096 0.68 0.544584
Target:  5'- cGCcGCCGUCCCgCCGCccccGCCgacggCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG-GGCGa---UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 149943 0.68 0.544584
Target:  5'- gGCaGGCgGaCCCCCGCgccGCCUCgGCcuUCg -3'
miRNA:   3'- -CG-CCGgCaGGGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 102241 0.69 0.517246
Target:  5'- cCGGCCGUCCgagcgaCCCGauccCUUUCGCUCg -3'
miRNA:   3'- cGCCGGCAGG------GGGCgau-GGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 1693 0.69 0.508254
Target:  5'- cGCGGCCucgaaguagGUCUCCCGgacggUGCCgcucCCGCUCc -3'
miRNA:   3'- -CGCCGG---------CAGGGGGCg----AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 33865 0.69 0.508254
Target:  5'- gGCGaGCCgGUCCCCCcCUucGCgUCCGCg- -3'
miRNA:   3'- -CGC-CGG-CAGGGGGcGA--UGgAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 2417 0.69 0.517246
Target:  5'- cGCGGCCGgccgCCCCCG--GCCUCUcccccgGCa- -3'
miRNA:   3'- -CGCCGGCa---GGGGGCgaUGGAGG------CGag -5'
8959 3' -63.6 NC_002512.2 + 68994 0.69 0.517246
Target:  5'- cCGGCCG--CCCCGCUucccgaacCCUCCGC-Cg -3'
miRNA:   3'- cGCCGGCagGGGGCGAu-------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 2704 0.69 0.535415
Target:  5'- aGCGccuGCCGcUCCCCCgGCUGCUcguccugCCGUUCc -3'
miRNA:   3'- -CGC---CGGC-AGGGGG-CGAUGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 142013 0.69 0.518149
Target:  5'- gGCGGCCGUCUcuUCCGCggccgggggccggcgACCcgCCGCg- -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa--------------UGGa-GGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.