miRNA display CGI


Results 81 - 100 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 154961 0.69 0.526301
Target:  5'- cGCGGuCCGcgauccgCCUCCGg-GCCUCCGCg- -3'
miRNA:   3'- -CGCC-GGCa------GGGGGCgaUGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 197162 0.69 0.525393
Target:  5'- aCGGCCGUCUuccaCCCGCgccucuucguCCUcauggacCCGCUCg -3'
miRNA:   3'- cGCCGGCAGG----GGGCGau--------GGA-------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 38592 0.69 0.499328
Target:  5'- cCGGCCcccGUCCCCCGCc-CCgCCGCc- -3'
miRNA:   3'- cGCCGG---CAGGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 171949 0.69 0.526301
Target:  5'- cGCGcCCGUCUaucuCCCGCUcgccguCCUCgCGCUCu -3'
miRNA:   3'- -CGCcGGCAGG----GGGCGAu-----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146910 0.69 0.526301
Target:  5'- gGCGGCCGacgUCUUCCGC-GCCgugcgCCGCg- -3'
miRNA:   3'- -CGCCGGC---AGGGGGCGaUGGa----GGCGag -5'
8959 3' -63.6 NC_002512.2 + 140956 0.69 0.526301
Target:  5'- aCGcGCCGcuucUCCCCCGaaCUGCaugUCCGCUCc -3'
miRNA:   3'- cGC-CGGC----AGGGGGC--GAUGg--AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 40116 0.69 0.505569
Target:  5'- aCGGCgggaggacggauuuUGUCCCCCGCcucgaagACCUCCuCUCc -3'
miRNA:   3'- cGCCG--------------GCAGGGGGCGa------UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 1693 0.69 0.508254
Target:  5'- cGCGGCCucgaaguagGUCUCCCGgacggUGCCgcucCCGCUCc -3'
miRNA:   3'- -CGCCGG---------CAGGGGGCg----AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 33865 0.69 0.508254
Target:  5'- gGCGaGCCgGUCCCCCcCUucGCgUCCGCg- -3'
miRNA:   3'- -CGC-CGG-CAGGGGGcGA--UGgAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 226817 0.69 0.499328
Target:  5'- cGUGGCCGccgCCgCCGCcGCgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCa--GGgGGCGaUGgAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 146604 0.69 0.490474
Target:  5'- gGCGGCCccagacgCCUCUGCUGCCgacgaUCCGC-Ca -3'
miRNA:   3'- -CGCCGGca-----GGGGGCGAUGG-----AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 139879 0.69 0.481692
Target:  5'- uGCGGgaUCGUgCUCCGCUACCUgCUGCa- -3'
miRNA:   3'- -CGCC--GGCAgGGGGCGAUGGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 215021 0.69 0.481692
Target:  5'- --cGCCuGUCCCgCGaCUACCUCUGCUg -3'
miRNA:   3'- cgcCGG-CAGGGgGC-GAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 147968 0.69 0.508254
Target:  5'- cGUcGUCGUCCCCCuccacgGCgcacgACCUCCGCg- -3'
miRNA:   3'- -CGcCGGCAGGGGG------CGa----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 143744 0.69 0.535415
Target:  5'- gGCGGCCGcggcgucggcuUCCagguCCGCgaccuCCUCCGCg- -3'
miRNA:   3'- -CGCCGGC-----------AGGg---GGCGau---GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 146160 0.69 0.499328
Target:  5'- uGCGGaUCGUCaUCCCGCUGCCgcgCgGCa- -3'
miRNA:   3'- -CGCC-GGCAG-GGGGCGAUGGa--GgCGag -5'
8959 3' -63.6 NC_002512.2 + 2704 0.69 0.535415
Target:  5'- aGCGccuGCCGcUCCCCCgGCUGCUcguccugCCGUUCc -3'
miRNA:   3'- -CGC---CGGC-AGGGGG-CGAUGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 142013 0.69 0.518149
Target:  5'- gGCGGCCGUCUcuUCCGCggccgggggccggcgACCcgCCGCg- -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa--------------UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 102241 0.69 0.517246
Target:  5'- cCGGCCGUCCgagcgaCCCGauccCUUUCGCUCg -3'
miRNA:   3'- cGCCGGCAGG------GGGCgau-GGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 68994 0.69 0.517246
Target:  5'- cCGGCCG--CCCCGCUucccgaacCCUCCGC-Cg -3'
miRNA:   3'- cGCCGGCagGGGGCGAu-------GGAGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.