miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 146910 0.69 0.526301
Target:  5'- gGCGGCCGacgUCUUCCGC-GCCgugcgCCGCg- -3'
miRNA:   3'- -CGCCGGC---AGGGGGCGaUGGa----GGCGag -5'
8959 3' -63.6 NC_002512.2 + 202023 0.69 0.517246
Target:  5'- cGgGGCCGggUCCCCCGCcgg-UCCgGCUCg -3'
miRNA:   3'- -CgCCGGC--AGGGGGCGauggAGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 107676 0.69 0.499328
Target:  5'- cGUcGCCGUCCCCUuCUggaucuccGCCUCCGC-Ca -3'
miRNA:   3'- -CGcCGGCAGGGGGcGA--------UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 143744 0.69 0.535415
Target:  5'- gGCGGCCGcggcgucggcuUCCagguCCGCgaccuCCUCCGCg- -3'
miRNA:   3'- -CGCCGGC-----------AGGg---GGCGau---GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 193760 0.69 0.535415
Target:  5'- cGCGGUCGUCgCCuCCGU--CCUCUGUUUu -3'
miRNA:   3'- -CGCCGGCAG-GG-GGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 140956 0.69 0.526301
Target:  5'- aCGcGCCGcuucUCCCCCGaaCUGCaugUCCGCUCc -3'
miRNA:   3'- cGC-CGGC----AGGGGGC--GAUGg--AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 139879 0.69 0.481692
Target:  5'- uGCGGgaUCGUgCUCCGCUACCUgCUGCa- -3'
miRNA:   3'- -CGCC--GGCAgGGGGCGAUGGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 55560 0.69 0.490474
Target:  5'- cGCGGCgGaCCCCCGCcUGCUgacccacgucCCGCUg -3'
miRNA:   3'- -CGCCGgCaGGGGGCG-AUGGa---------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 18093 0.69 0.490474
Target:  5'- cGCGGCgGgacggCCCCCGCggccacccggGCCUCCacgucCUCc -3'
miRNA:   3'- -CGCCGgCa----GGGGGCGa---------UGGAGGc----GAG- -5'
8959 3' -63.6 NC_002512.2 + 38592 0.69 0.499328
Target:  5'- cCGGCCcccGUCCCCCGCc-CCgCCGCc- -3'
miRNA:   3'- cGCCGG---CAGGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 79827 0.69 0.499328
Target:  5'- gGCGGCgGUCCCCC-CUcccGCC-CCGUcgUCc -3'
miRNA:   3'- -CGCCGgCAGGGGGcGA---UGGaGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 4053 0.68 0.573306
Target:  5'- aGCGGCuCGaUCCCCCGCggcucgaggucccagGCCacccggCCGCcCg -3'
miRNA:   3'- -CGCCG-GC-AGGGGGCGa--------------UGGa-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 198727 0.68 0.591088
Target:  5'- gGCGGUgCGUCUCCCGg-GCCaggUCCGCg- -3'
miRNA:   3'- -CGCCG-GCAGGGGGCgaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 219373 0.68 0.591088
Target:  5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3'
miRNA:   3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 318 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 229721 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 223947 0.68 0.563067
Target:  5'- cGCGGCUGUgaCCCCUGCgucCCUaUCGCa- -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGau-GGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 133257 0.68 0.578909
Target:  5'- cCGGUCGcgguuuccucgcccUCCCCCGCgu-CUCCGCg- -3'
miRNA:   3'- cGCCGGC--------------AGGGGGCGaugGAGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.