miRNA display CGI


Results 121 - 140 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 70895 0.68 0.563067
Target:  5'- cGgGGCCGccgCCUCCGCcccgccgugGCCgccgaaCCGCUCg -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--------UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149943 0.68 0.544584
Target:  5'- gGCaGGCgGaCCCCCGCgccGCCUCgGCcuUCg -3'
miRNA:   3'- -CG-CCGgCaGGGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 165013 0.68 0.544584
Target:  5'- -aGGCCGUCCCCCcCUGCgaUUUCGUg- -3'
miRNA:   3'- cgCCGGCAGGGGGcGAUG--GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 109096 0.68 0.544584
Target:  5'- cGCcGCCGUCCCgCCGCccccGCCgacggCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG-GGCGa---UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 133598 0.68 0.572373
Target:  5'- aGCgGGCCGgCCuCCUGCggACCUaCgGCUCg -3'
miRNA:   3'- -CG-CCGGCaGG-GGGCGa-UGGA-GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 318 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 198727 0.68 0.591088
Target:  5'- gGCGGUgCGUCUCCCGg-GCCaggUCCGCg- -3'
miRNA:   3'- -CGCCG-GCAGGGGGCgaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 158880 0.68 0.581715
Target:  5'- gGCGGCgGcCCCCCGU--CCUUCGUc- -3'
miRNA:   3'- -CGCCGgCaGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 222130 0.68 0.581715
Target:  5'- cGCGGCCGacuaccgCCCCgGCUccGCCcccgaggaCCGCUa -3'
miRNA:   3'- -CGCCGGCa------GGGGgCGA--UGGa-------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 218289 0.68 0.572373
Target:  5'- uCGGCCucgggGUCCCCgGCccuggGCggCCGCUCg -3'
miRNA:   3'- cGCCGG-----CAGGGGgCGa----UGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 196196 0.68 0.572373
Target:  5'- aCGGCCGggUCCCUgGCgaGCCUCCGg-- -3'
miRNA:   3'- cGCCGGC--AGGGGgCGa-UGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 167286 0.68 0.572373
Target:  5'- cGCcGCCGUCaCCCGCgACCuguUCCGCg- -3'
miRNA:   3'- -CGcCGGCAGgGGGCGaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 136725 0.68 0.572373
Target:  5'- uGCGGUgaUCCugaCCCGCUACCUgCGC-Cg -3'
miRNA:   3'- -CGCCGgcAGG---GGGCGAUGGAgGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 126677 0.68 0.572373
Target:  5'- cGCGaGCCG-CCUCgGaUACCcCCGCUCg -3'
miRNA:   3'- -CGC-CGGCaGGGGgCgAUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 190568 0.68 0.571441
Target:  5'- gGCGGCCGUCUUCCacaccgacaacGUguggACCUuccugcggaucagCCGCUCg -3'
miRNA:   3'- -CGCCGGCAGGGGG-----------CGa---UGGA-------------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 225681 0.68 0.563067
Target:  5'- cGCGGCCGcUCCCaCCG--AUCUCCGgcgucCUCa -3'
miRNA:   3'- -CGCCGGC-AGGG-GGCgaUGGAGGC-----GAG- -5'
8959 3' -63.6 NC_002512.2 + 106744 0.68 0.563067
Target:  5'- cGCGGCgccgccgcccCGUCCCCCGggACggCCGC-Cg -3'
miRNA:   3'- -CGCCG----------GCAGGGGGCgaUGgaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 216211 0.68 0.553802
Target:  5'- cGCGGCCGUCgCCUCGUccgggaGCUggagCCGCg- -3'
miRNA:   3'- -CGCCGGCAG-GGGGCGa-----UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 120530 0.68 0.553802
Target:  5'- cGCGGCUuUCCCCCGgcGgCUCC-CUCg -3'
miRNA:   3'- -CGCCGGcAGGGGGCgaUgGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 213002 0.68 0.552878
Target:  5'- cGCGGCCGUCgggCCCGggGCCcucucgaggugcgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGg--GGGCgaUGG-------------AGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.