miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 68994 0.69 0.517246
Target:  5'- cCGGCCG--CCCCGCUucccgaacCCUCCGC-Cg -3'
miRNA:   3'- cGCCGGCagGGGGCGAu-------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 2417 0.69 0.517246
Target:  5'- cGCGGCCGgccgCCCCCG--GCCUCUcccccgGCa- -3'
miRNA:   3'- -CGCCGGCa---GGGGGCgaUGGAGG------CGag -5'
8959 3' -63.6 NC_002512.2 + 142013 0.69 0.518149
Target:  5'- gGCGGCCGUCUcuUCCGCggccgggggccggcgACCcgCCGCg- -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa--------------UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 197162 0.69 0.525393
Target:  5'- aCGGCCGUCUuccaCCCGCgccucuucguCCUcauggacCCGCUCg -3'
miRNA:   3'- cGCCGGCAGG----GGGCGau--------GGA-------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 154961 0.69 0.526301
Target:  5'- cGCGGuCCGcgauccgCCUCCGg-GCCUCCGCg- -3'
miRNA:   3'- -CGCC-GGCa------GGGGGCgaUGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 171949 0.69 0.526301
Target:  5'- cGCGcCCGUCUaucuCCCGCUcgccguCCUCgCGCUCu -3'
miRNA:   3'- -CGCcGGCAGG----GGGCGAu-----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146910 0.69 0.526301
Target:  5'- gGCGGCCGacgUCUUCCGC-GCCgugcgCCGCg- -3'
miRNA:   3'- -CGCCGGC---AGGGGGCGaUGGa----GGCGag -5'
8959 3' -63.6 NC_002512.2 + 140956 0.69 0.526301
Target:  5'- aCGcGCCGcuucUCCCCCGaaCUGCaugUCCGCUCc -3'
miRNA:   3'- cGC-CGGC----AGGGGGC--GAUGg--AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 193760 0.69 0.535415
Target:  5'- cGCGGUCGUCgCCuCCGU--CCUCUGUUUu -3'
miRNA:   3'- -CGCCGGCAG-GG-GGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 143744 0.69 0.535415
Target:  5'- gGCGGCCGcggcgucggcuUCCagguCCGCgaccuCCUCCGCg- -3'
miRNA:   3'- -CGCCGGC-----------AGGg---GGCGau---GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 2704 0.69 0.535415
Target:  5'- aGCGccuGCCGcUCCCCCgGCUGCUcguccugCCGUUCc -3'
miRNA:   3'- -CGC---CGGC-AGGGGG-CGAUGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 109096 0.68 0.544584
Target:  5'- cGCcGCCGUCCCgCCGCccccGCCgacggCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG-GGCGa---UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 128426 0.68 0.544584
Target:  5'- uCGGCCGguguccaccCCCCCGCUcucggcgucGCCgcgCCGC-Cg -3'
miRNA:   3'- cGCCGGCa--------GGGGGCGA---------UGGa--GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 165013 0.68 0.544584
Target:  5'- -aGGCCGUCCCCCcCUGCgaUUUCGUg- -3'
miRNA:   3'- cgCCGGCAGGGGGcGAUG--GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 149943 0.68 0.544584
Target:  5'- gGCaGGCgGaCCCCCGCgccGCCUCgGCcuUCg -3'
miRNA:   3'- -CG-CCGgCaGGGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 25120 0.68 0.544584
Target:  5'- cCGGUCGUCCCCgCGCcccagGCCgggaUCGCUg -3'
miRNA:   3'- cGCCGGCAGGGG-GCGa----UGGa---GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 213002 0.68 0.552878
Target:  5'- cGCGGCCGUCgggCCCGggGCCcucucgaggugcgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGg--GGGCgaUGG-------------AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 154835 0.68 0.553802
Target:  5'- cCGGUC-UCCCCCGC--CCUCCGUc- -3'
miRNA:   3'- cGCCGGcAGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 120530 0.68 0.553802
Target:  5'- cGCGGCUuUCCCCCGgcGgCUCC-CUCg -3'
miRNA:   3'- -CGCCGGcAGGGGGCgaUgGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 5348 0.68 0.553802
Target:  5'- -aGGCCaugGUCCCCCGggACCugugguccUCCgGCUCu -3'
miRNA:   3'- cgCCGG---CAGGGGGCgaUGG--------AGG-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.