Results 141 - 160 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 133659 | 0.68 | 0.581715 |
Target: 5'- gGCGGUCG-CCgCCGCcGCCgcggCCGC-Cg -3' miRNA: 3'- -CGCCGGCaGGgGGCGaUGGa---GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 65428 | 0.68 | 0.581715 |
Target: 5'- gGCGGUCGUcgCCCCCGCcgagggcGCCgagCgGCUUc -3' miRNA: 3'- -CGCCGGCA--GGGGGCGa------UGGa--GgCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 130932 | 0.68 | 0.581715 |
Target: 5'- uCGGCCcgGUUCCCCGCccgACUgcaUCCgGCUCu -3' miRNA: 3'- cGCCGG--CAGGGGGCGa--UGG---AGG-CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133698 | 0.68 | 0.581715 |
Target: 5'- cGCGGCCGcCUCCCGg-ACCaCCGgaCg -3' miRNA: 3'- -CGCCGGCaGGGGGCgaUGGaGGCgaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 107955 | 0.68 | 0.581715 |
Target: 5'- cGCGGguCCGggaCCgCCGCcGCCUcgucCCGCUCg -3' miRNA: 3'- -CGCC--GGCa--GGgGGCGaUGGA----GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 146974 | 0.68 | 0.581715 |
Target: 5'- cGCGGCCGagaCUUCCGCUGCCUgaccaCCGa-- -3' miRNA: 3'- -CGCCGGCa--GGGGGCGAUGGA-----GGCgag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 222130 | 0.68 | 0.581715 |
Target: 5'- cGCGGCCGacuaccgCCCCgGCUccGCCcccgaggaCCGCUa -3' miRNA: 3'- -CGCCGGCa------GGGGgCGA--UGGa-------GGCGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 158880 | 0.68 | 0.581715 |
Target: 5'- gGCGGCgGcCCCCCGU--CCUUCGUc- -3' miRNA: 3'- -CGCCGgCaGGGGGCGauGGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 95651 | 0.68 | 0.581715 |
Target: 5'- uCGGCCGcCCCCgGCacaGCCUCuCGUg- -3' miRNA: 3'- cGCCGGCaGGGGgCGa--UGGAG-GCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 229721 | 0.68 | 0.591088 |
Target: 5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3' miRNA: 3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 318 | 0.68 | 0.591088 |
Target: 5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3' miRNA: 3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 219373 | 0.68 | 0.591088 |
Target: 5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3' miRNA: 3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 48855 | 0.68 | 0.591088 |
Target: 5'- uGCGGCCuccugCCCaggaCGCggGCCUCC-CUCu -3' miRNA: 3'- -CGCCGGca---GGGg---GCGa-UGGAGGcGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 69115 | 0.68 | 0.591088 |
Target: 5'- uGC-GCCGg-CCCCGCUccgggACCUCCGUg- -3' miRNA: 3'- -CGcCGGCagGGGGCGA-----UGGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 198727 | 0.68 | 0.591088 |
Target: 5'- gGCGGUgCGUCUCCCGg-GCCaggUCCGCg- -3' miRNA: 3'- -CGCCG-GCAGGGGGCgaUGG---AGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 199929 | 0.67 | 0.600486 |
Target: 5'- cGCGGCCGgCCgCCGCUcACCggCUGUcCa -3' miRNA: 3'- -CGCCGGCaGGgGGCGA-UGGa-GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 149889 | 0.67 | 0.600486 |
Target: 5'- cCGGCUG-CCgCUGCcuggACCUCCGCg- -3' miRNA: 3'- cGCCGGCaGGgGGCGa---UGGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 6089 | 0.67 | 0.600486 |
Target: 5'- gGCGGUcgccgccgaCGUCCCCgGCgACgUCCGgUCc -3' miRNA: 3'- -CGCCG---------GCAGGGGgCGaUGgAGGCgAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 35261 | 0.67 | 0.600486 |
Target: 5'- -gGGCagGUCCCCCGCggcgACggCCGCg- -3' miRNA: 3'- cgCCGg-CAGGGGGCGa---UGgaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 79567 | 0.67 | 0.600486 |
Target: 5'- cGCGG-CGUCCucgccgccgguCUCGCU-CCUCCGcCUCu -3' miRNA: 3'- -CGCCgGCAGG-----------GGGCGAuGGAGGC-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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