miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 79567 0.67 0.600486
Target:  5'- cGCGG-CGUCCucgccgccgguCUCGCU-CCUCCGcCUCu -3'
miRNA:   3'- -CGCCgGCAGG-----------GGGCGAuGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 224720 0.67 0.600486
Target:  5'- cCGGCCGcCgCCCCGgUcgcGCCgcugCCGUUCu -3'
miRNA:   3'- cGCCGGCaG-GGGGCgA---UGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149889 0.67 0.600486
Target:  5'- cCGGCUG-CCgCUGCcuggACCUCCGCg- -3'
miRNA:   3'- cGCCGGCaGGgGGCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 199929 0.67 0.600486
Target:  5'- cGCGGCCGgCCgCCGCUcACCggCUGUcCa -3'
miRNA:   3'- -CGCCGGCaGGgGGCGA-UGGa-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 174401 0.67 0.600486
Target:  5'- cGUGGCgCGUUCCCgcggCGCcgggGCCUCCGUc- -3'
miRNA:   3'- -CGCCG-GCAGGGG----GCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 35261 0.67 0.600486
Target:  5'- -gGGCagGUCCCCCGCggcgACggCCGCg- -3'
miRNA:   3'- cgCCGg-CAGGGGGCGa---UGgaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 153268 0.67 0.600486
Target:  5'- uGCGGCgGgUCCUgguCgGCUGgCUCCGCUg -3'
miRNA:   3'- -CGCCGgC-AGGG---GgCGAUgGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 6089 0.67 0.600486
Target:  5'- gGCGGUcgccgccgaCGUCCCCgGCgACgUCCGgUCc -3'
miRNA:   3'- -CGCCG---------GCAGGGGgCGaUGgAGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 148449 0.67 0.600486
Target:  5'- gGgGGCCGggcCCCCCGCgggACggagCCGCg- -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--UGga--GGCGag -5'
8959 3' -63.6 NC_002512.2 + 318 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 219373 0.68 0.591088
Target:  5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3'
miRNA:   3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 229721 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 69115 0.68 0.591088
Target:  5'- uGC-GCCGg-CCCCGCUccgggACCUCCGUg- -3'
miRNA:   3'- -CGcCGGCagGGGGCGA-----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 198727 0.68 0.591088
Target:  5'- gGCGGUgCGUCUCCCGg-GCCaggUCCGCg- -3'
miRNA:   3'- -CGCCG-GCAGGGGGCgaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 48855 0.68 0.591088
Target:  5'- uGCGGCCuccugCCCaggaCGCggGCCUCC-CUCu -3'
miRNA:   3'- -CGCCGGca---GGGg---GCGa-UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 133659 0.68 0.581715
Target:  5'- gGCGGUCG-CCgCCGCcGCCgcggCCGC-Cg -3'
miRNA:   3'- -CGCCGGCaGGgGGCGaUGGa---GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 158880 0.68 0.581715
Target:  5'- gGCGGCgGcCCCCCGU--CCUUCGUc- -3'
miRNA:   3'- -CGCCGgCaGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 65428 0.68 0.581715
Target:  5'- gGCGGUCGUcgCCCCCGCcgagggcGCCgagCgGCUUc -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGa------UGGa--GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 130932 0.68 0.581715
Target:  5'- uCGGCCcgGUUCCCCGCccgACUgcaUCCgGCUCu -3'
miRNA:   3'- cGCCGG--CAGGGGGCGa--UGG---AGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 133698 0.68 0.581715
Target:  5'- cGCGGCCGcCUCCCGg-ACCaCCGgaCg -3'
miRNA:   3'- -CGCCGGCaGGGGGCgaUGGaGGCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.