miRNA display CGI


Results 81 - 100 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 96447 0.67 0.647657
Target:  5'- uGCGccaCCGUCCCCCGgaACCaaaCGCg- -3'
miRNA:   3'- -CGCc--GGCAGGGGGCgaUGGag-GCGag -5'
8959 3' -63.6 NC_002512.2 + 96894 0.72 0.339017
Target:  5'- gGgGGCCGgguUCCCCUGCUACUacCCGCg- -3'
miRNA:   3'- -CgCCGGC---AGGGGGCGAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 97481 0.66 0.694561
Target:  5'- cGCGGUCGaUCCCCCcaucacguucGUccacgACUUCCGCg- -3'
miRNA:   3'- -CGCCGGC-AGGGGG----------CGa----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 97757 0.66 0.666497
Target:  5'- gGCGGUCGUCUugCUCGCgGCCUaCCGggCg -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGaUGGA-GGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 98144 0.66 0.657086
Target:  5'- cGCGGCCGcccgCCCCgGCggucgCCGCg- -3'
miRNA:   3'- -CGCCGGCa---GGGGgCGauggaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 98249 0.66 0.701058
Target:  5'- cGCGGaccCCGUacuucccguccuugCCCCCGCg----CCGCUCg -3'
miRNA:   3'- -CGCC---GGCA--------------GGGGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 98842 0.67 0.647657
Target:  5'- cGCGgcGCCGuccUCCCCCGCgGCC-CCGacgccCUCg -3'
miRNA:   3'- -CGC--CGGC---AGGGGGCGaUGGaGGC-----GAG- -5'
8959 3' -63.6 NC_002512.2 + 99754 0.73 0.298778
Target:  5'- cGCGGCCGcgacaccaCCCCGg-GCCUCCaGCUCc -3'
miRNA:   3'- -CGCCGGCag------GGGGCgaUGGAGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 100029 0.79 0.134575
Target:  5'- cGCcGCCGUCCUCCGCcuccGCCUCCGcCUCc -3'
miRNA:   3'- -CGcCGGCAGGGGGCGa---UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 100699 0.66 0.703836
Target:  5'- gGCGGCC-UCCUCCGCagcguCC-CCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGau---GGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 101477 0.66 0.666497
Target:  5'- cCGGCCGagacCCCCCGUccCCggacgagUCGCUCu -3'
miRNA:   3'- cGCCGGCa---GGGGGCGauGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 101609 0.73 0.309135
Target:  5'- gGCGGCCGUCggCCCgGC-GCCgggacgcgagucgCCGCUCg -3'
miRNA:   3'- -CGCCGGCAG--GGGgCGaUGGa------------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 102241 0.69 0.517246
Target:  5'- cCGGCCGUCCgagcgaCCCGauccCUUUCGCUCg -3'
miRNA:   3'- cGCCGGCAGG------GGGCgau-GGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 102520 0.67 0.619336
Target:  5'- cGCGGCCGUcgggggucaggCCCCCGguuuccCUACCgaCUGCg- -3'
miRNA:   3'- -CGCCGGCA-----------GGGGGC------GAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 102647 0.68 0.560284
Target:  5'- cCGGCCGUCgCCUCGgUcgugcccgcgucucACCUCC-CUCa -3'
miRNA:   3'- cGCCGGCAG-GGGGCgA--------------UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 102794 0.7 0.430719
Target:  5'- cGCcGCCG-CCgCCGC--CCUCCGCUCc -3'
miRNA:   3'- -CGcCGGCaGGgGGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 103443 0.67 0.647657
Target:  5'- gGCGGCCG-CCgCCGUcGCCggCCGggCg -3'
miRNA:   3'- -CGCCGGCaGGgGGCGaUGGa-GGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 105690 0.66 0.660852
Target:  5'- cGCGGUgccucUGUCCCCgGCggacgagcagccaggUGCaCUCcCGCUCg -3'
miRNA:   3'- -CGCCG-----GCAGGGGgCG---------------AUG-GAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 105965 0.67 0.647657
Target:  5'- aCGGCCaG-CCCgCCGUccACCUucCCGCUCg -3'
miRNA:   3'- cGCCGG-CaGGG-GGCGa-UGGA--GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.