Results 121 - 140 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 126411 | 0.66 | 0.713059 |
Target: 5'- cGCGGCCG-CCgCCGagACCcgagCCGCg- -3' miRNA: 3'- -CGCCGGCaGGgGGCgaUGGa---GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 126677 | 0.68 | 0.572373 |
Target: 5'- cGCGaGCCG-CCUCgGaUACCcCCGCUCg -3' miRNA: 3'- -CGC-CGGCaGGGGgCgAUGGaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 126825 | 0.7 | 0.464364 |
Target: 5'- uGCGagguGCCGUUCCCCGCgcuccUGCCcCCGgUCu -3' miRNA: 3'- -CGC----CGGCAGGGGGCG-----AUGGaGGCgAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 127682 | 0.75 | 0.240107 |
Target: 5'- cCGGCCGcggcgaUCUCCCGCUucuCCUCCucGCUCa -3' miRNA: 3'- cGCCGGC------AGGGGGCGAu--GGAGG--CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 127751 | 0.67 | 0.632553 |
Target: 5'- cGCGGCCGUagacggccaggguccCCCuCCGacgGCCgaggCCGCa- -3' miRNA: 3'- -CGCCGGCA---------------GGG-GGCga-UGGa---GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 128029 | 0.73 | 0.292442 |
Target: 5'- uGCGGCCGggUCgCUCGCUGCCUCUGg-- -3' miRNA: 3'- -CGCCGGC--AGgGGGCGAUGGAGGCgag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 128426 | 0.68 | 0.544584 |
Target: 5'- uCGGCCGguguccaccCCCCCGCUcucggcgucGCCgcgCCGC-Cg -3' miRNA: 3'- cGCCGGCa--------GGGGGCGA---------UGGa--GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 129114 | 0.66 | 0.657086 |
Target: 5'- gGCgGGCgGUCCUCUGCgacuacaGCCUCgCGCa- -3' miRNA: 3'- -CG-CCGgCAGGGGGCGa------UGGAG-GCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 129587 | 0.67 | 0.619336 |
Target: 5'- uCGGCCccgucgCCCCCGaCgaacucGCC-CCGCUCg -3' miRNA: 3'- cGCCGGca----GGGGGC-Ga-----UGGaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 129797 | 0.67 | 0.609904 |
Target: 5'- cCGGCaGUCCCCC-CUuccGCCUCUuCUCg -3' miRNA: 3'- cGCCGgCAGGGGGcGA---UGGAGGcGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 129874 | 0.67 | 0.632553 |
Target: 5'- gGCGGCgGgggauucgccgucgCCCUCGCcgACgaUCCGCUCu -3' miRNA: 3'- -CGCCGgCa-------------GGGGGCGa-UGg-AGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 130932 | 0.68 | 0.581715 |
Target: 5'- uCGGCCcgGUUCCCCGCccgACUgcaUCCgGCUCu -3' miRNA: 3'- cGCCGG--CAGGGGGCGa--UGG---AGG-CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 131785 | 0.71 | 0.422533 |
Target: 5'- -aGGUCGUCCCgCGCcguCCccgucaUCCGCUCg -3' miRNA: 3'- cgCCGGCAGGGgGCGau-GG------AGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 132028 | 0.7 | 0.438997 |
Target: 5'- gGCGGguCCGUCUCggUCGUcGCCUCCGCUUc -3' miRNA: 3'- -CGCC--GGCAGGG--GGCGaUGGAGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133257 | 0.68 | 0.578909 |
Target: 5'- cCGGUCGcgguuuccucgcccUCCCCCGCgu-CUCCGCg- -3' miRNA: 3'- cGCCGGC--------------AGGGGGCGaugGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133598 | 0.68 | 0.572373 |
Target: 5'- aGCgGGCCGgCCuCCUGCggACCUaCgGCUCg -3' miRNA: 3'- -CG-CCGGCaGG-GGGCGa-UGGA-GgCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133659 | 0.68 | 0.581715 |
Target: 5'- gGCGGUCG-CCgCCGCcGCCgcggCCGC-Cg -3' miRNA: 3'- -CGCCGGCaGGgGGCGaUGGa---GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133698 | 0.68 | 0.581715 |
Target: 5'- cGCGGCCGcCUCCCGg-ACCaCCGgaCg -3' miRNA: 3'- -CGCCGGCaGGGGGCgaUGGaGGCgaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133898 | 0.67 | 0.638219 |
Target: 5'- cCGGCgGUCCCgggCGCUggccuACCUCCuGCUg -3' miRNA: 3'- cGCCGgCAGGGg--GCGA-----UGGAGG-CGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 134090 | 0.71 | 0.398547 |
Target: 5'- uCGGauccgCGUCCCCgGC-GCCUaCCGCUCg -3' miRNA: 3'- cGCCg----GCAGGGGgCGaUGGA-GGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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