miRNA display CGI


Results 61 - 80 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 186509 0.74 0.286212
Target:  5'- cGCGGCCGUCCgggCCaGCgucgACCUCUGCg- -3'
miRNA:   3'- -CGCCGGCAGG---GGgCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 185444 0.75 0.245513
Target:  5'- -aGGCCGUCCUguCCGC--CCUCUGCUCc -3'
miRNA:   3'- cgCCGGCAGGG--GGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 184770 0.7 0.456672
Target:  5'- cGUGGUCGUCgaCCCCGaggacguggcccggGCCUCCGCg- -3'
miRNA:   3'- -CGCCGGCAG--GGGGCga------------UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 184682 0.71 0.386116
Target:  5'- gGCGGCCGUCCgCgCCGCcggucccggucgagACCUCCGa-- -3'
miRNA:   3'- -CGCCGGCAGG-G-GGCGa-------------UGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 184597 0.66 0.700131
Target:  5'- gGCGGuCCGUCCgaCCCGCgagacgagcgcgaGCCcCCGC-Cg -3'
miRNA:   3'- -CGCC-GGCAGG--GGGCGa------------UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 181384 0.67 0.647657
Target:  5'- cGCGcGUCGUCgUgCGCccugGCCUCCGC-Cg -3'
miRNA:   3'- -CGC-CGGCAGgGgGCGa---UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 180895 0.67 0.647657
Target:  5'- cGCaGGCCGUCUUCCaGCUccgcguUCUCCGC-Ca -3'
miRNA:   3'- -CG-CCGGCAGGGGG-CGAu-----GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 180317 0.67 0.638219
Target:  5'- aGCGGCguCGUCagguCCCGCUGCgccuuCUCC-CUCg -3'
miRNA:   3'- -CGCCG--GCAGg---GGGCGAUG-----GAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 179998 0.66 0.703836
Target:  5'- cGUGGCCcgugaUCCCCCaGCgggACUcgaUCaCGCUCg -3'
miRNA:   3'- -CGCCGGc----AGGGGG-CGa--UGG---AG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 177083 0.74 0.256627
Target:  5'- cGCGuCCGUcagCCCCCGCUGCguCUCCGCg- -3'
miRNA:   3'- -CGCcGGCA---GGGGGCGAUG--GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 175806 0.66 0.657086
Target:  5'- gGCGGCg--UCCCgGCgg-CUCCGCUCg -3'
miRNA:   3'- -CGCCGgcaGGGGgCGaugGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 174401 0.67 0.600486
Target:  5'- cGUGGCgCGUUCCCgcggCGCcgggGCCUCCGUc- -3'
miRNA:   3'- -CGCCG-GCAGGGG----GCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 172905 0.79 0.128293
Target:  5'- aCGGCUGUCCCCCGUggggACuCUCCaaGCUCg -3'
miRNA:   3'- cGCCGGCAGGGGGCGa---UG-GAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 172849 0.72 0.367956
Target:  5'- cCGGUCGUCggaCGCgGCCUCCGCUCc -3'
miRNA:   3'- cGCCGGCAGgggGCGaUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 172774 0.69 0.508254
Target:  5'- uCGGCgcacCCCCCGCUuCCUcgucCCGCUCg -3'
miRNA:   3'- cGCCGgca-GGGGGCGAuGGA----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 172552 0.67 0.638219
Target:  5'- -aGGCCaGcUCCCCCuGCgugacguuCCUCCGCg- -3'
miRNA:   3'- cgCCGG-C-AGGGGG-CGau------GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 171949 0.69 0.526301
Target:  5'- cGCGcCCGUCUaucuCCCGCUcgccguCCUCgCGCUCu -3'
miRNA:   3'- -CGCcGGCAGG----GGGCGAu-----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 167286 0.68 0.572373
Target:  5'- cGCcGCCGUCaCCCGCgACCuguUCCGCg- -3'
miRNA:   3'- -CGcCGGCAGgGGGCGaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 165013 0.68 0.544584
Target:  5'- -aGGCCGUCCCCCcCUGCgaUUUCGUg- -3'
miRNA:   3'- cgCCGGCAGGGGGcGAUG--GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 158880 0.68 0.581715
Target:  5'- gGCGGCgGcCCCCCGU--CCUUCGUc- -3'
miRNA:   3'- -CGCCGgCaGGGGGCGauGGAGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.