miRNA display CGI


Results 81 - 100 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 158315 0.66 0.685241
Target:  5'- cGCGGUCGUCCggcgcgagUCCGCgcuccggACCgucuucgacacCCGCUCc -3'
miRNA:   3'- -CGCCGGCAGG--------GGGCGa------UGGa----------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 157878 0.66 0.693631
Target:  5'- gGCGGCCuggcGUUCCuccuguaCCGCUGCCacgaCCGCa- -3'
miRNA:   3'- -CGCCGG----CAGGG-------GGCGAUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 155269 0.7 0.455822
Target:  5'- cGCGGCgGUCUCgCGCUcCgCUCCGgUCc -3'
miRNA:   3'- -CGCCGgCAGGGgGCGAuG-GAGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 155239 0.7 0.447366
Target:  5'- cGCGGCCGUCCcgCCCGUcgcgGCgUCgacgGCUCg -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa---UGgAGg---CGAG- -5'
8959 3' -63.6 NC_002512.2 + 154961 0.69 0.526301
Target:  5'- cGCGGuCCGcgauccgCCUCCGg-GCCUCCGCg- -3'
miRNA:   3'- -CGCC-GGCa------GGGGGCgaUGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 154835 0.68 0.553802
Target:  5'- cCGGUC-UCCCCCGC--CCUCCGUc- -3'
miRNA:   3'- cGCCGGcAGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 153311 0.66 0.675884
Target:  5'- uCGGCCGgUUCCCGCUgggguGgUUCCGCUg -3'
miRNA:   3'- cGCCGGCaGGGGGCGA-----UgGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 153268 0.67 0.600486
Target:  5'- uGCGGCgGgUCCUgguCgGCUGgCUCCGCUg -3'
miRNA:   3'- -CGCCGgC-AGGG---GgCGAUgGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 152743 0.67 0.623111
Target:  5'- gGCGGUCGgaaggUCCCCCGacggcgaggucuCUaucgaugaccgccggGCCUCCGuCUCg -3'
miRNA:   3'- -CGCCGGC-----AGGGGGC------------GA---------------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 150686 0.7 0.438997
Target:  5'- cGCGGCgGUCgCCCCGacggACCgUUgGCUCu -3'
miRNA:   3'- -CGCCGgCAG-GGGGCga--UGG-AGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149943 0.68 0.544584
Target:  5'- gGCaGGCgGaCCCCCGCgccGCCUCgGCcuUCg -3'
miRNA:   3'- -CG-CCGgCaGGGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 149889 0.67 0.600486
Target:  5'- cCGGCUG-CCgCUGCcuggACCUCCGCg- -3'
miRNA:   3'- cGCCGGCaGGgGGCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 149650 0.71 0.422533
Target:  5'- cCGGCCcgcacGUCCCggaGCUGCCcuaUCCGCUCc -3'
miRNA:   3'- cGCCGG-----CAGGGgg-CGAUGG---AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149176 0.66 0.694561
Target:  5'- cGCGGgcCCGcgcgCCCUCGCcccCCggacgCCGCUCg -3'
miRNA:   3'- -CGCC--GGCa---GGGGGCGau-GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 148521 0.7 0.464364
Target:  5'- gGCGGCCG-CCgCCCGCc-CCggCCGCg- -3'
miRNA:   3'- -CGCCGGCaGG-GGGCGauGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 148449 0.67 0.600486
Target:  5'- gGgGGCCGggcCCCCCGCgggACggagCCGCg- -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--UGga--GGCGag -5'
8959 3' -63.6 NC_002512.2 + 147968 0.69 0.508254
Target:  5'- cGUcGUCGUCCCCCuccacgGCgcacgACCUCCGCg- -3'
miRNA:   3'- -CGcCGGCAGGGGG------CGa----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 147647 0.8 0.113757
Target:  5'- gGCGGCCG-CUCCCGCUACCgucaccggccCCGCUUc -3'
miRNA:   3'- -CGCCGGCaGGGGGCGAUGGa---------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 147455 0.74 0.280087
Target:  5'- gGCGGCCGUCUgUCGCUGCugguCUUCGCg- -3'
miRNA:   3'- -CGCCGGCAGGgGGCGAUG----GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 146974 0.68 0.581715
Target:  5'- cGCGGCCGagaCUUCCGCUGCCUgaccaCCGa-- -3'
miRNA:   3'- -CGCCGGCa--GGGGGCGAUGGA-----GGCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.