miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 146910 0.69 0.526301
Target:  5'- gGCGGCCGacgUCUUCCGC-GCCgugcgCCGCg- -3'
miRNA:   3'- -CGCCGGC---AGGGGGCGaUGGa----GGCGag -5'
8959 3' -63.6 NC_002512.2 + 146604 0.69 0.490474
Target:  5'- gGCGGCCccagacgCCUCUGCUGCCgacgaUCCGC-Ca -3'
miRNA:   3'- -CGCCGGca-----GGGGGCGAUGG-----AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 146328 0.66 0.694561
Target:  5'- aCGGCCGcUCCgUCCGCaug--CCGCUCa -3'
miRNA:   3'- cGCCGGC-AGG-GGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146160 0.69 0.499328
Target:  5'- uGCGGaUCGUCaUCCCGCUGCCgcgCgGCa- -3'
miRNA:   3'- -CGCC-GGCAG-GGGGCGAUGGa--GgCGag -5'
8959 3' -63.6 NC_002512.2 + 146120 0.66 0.666497
Target:  5'- gGCGgcGCCGUCUUCUGC-ACCUgCCGC-Cg -3'
miRNA:   3'- -CGC--CGGCAGGGGGCGaUGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 145615 0.73 0.31842
Target:  5'- gGCGGgCGUUCggCCCGCUGCCcgccuUCCGCgUCg -3'
miRNA:   3'- -CGCCgGCAGG--GGGCGAUGG-----AGGCG-AG- -5'
8959 3' -63.6 NC_002512.2 + 145423 0.7 0.444846
Target:  5'- uCGGCuCGUCCgCCGCggugcuggacgagauCCUCCGcCUCa -3'
miRNA:   3'- cGCCG-GCAGGgGGCGau-------------GGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 144320 0.69 0.499328
Target:  5'- cCGGCCG-CUCCCGCUcccgcGCCUCCu--- -3'
miRNA:   3'- cGCCGGCaGGGGGCGA-----UGGAGGcgag -5'
8959 3' -63.6 NC_002512.2 + 143744 0.69 0.535415
Target:  5'- gGCGGCCGcggcgucggcuUCCagguCCGCgaccuCCUCCGCg- -3'
miRNA:   3'- -CGCCGGC-----------AGGg---GGCGau---GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 143438 0.79 0.134575
Target:  5'- cGCGGCaccCGUCCCCCGUcccgcGCCccgUCCGCUCg -3'
miRNA:   3'- -CGCCG---GCAGGGGGCGa----UGG---AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 143208 0.75 0.229594
Target:  5'- -gGuGCCGUCCCCCucGCgcGCCgUCCGCUCg -3'
miRNA:   3'- cgC-CGGCAGGGGG--CGa-UGG-AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 142013 0.69 0.518149
Target:  5'- gGCGGCCGUCUcuUCCGCggccgggggccggcgACCcgCCGCg- -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa--------------UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 140956 0.69 0.526301
Target:  5'- aCGcGCCGcuucUCCCCCGaaCUGCaugUCCGCUCc -3'
miRNA:   3'- cGC-CGGC----AGGGGGC--GAUGg--AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 139879 0.69 0.481692
Target:  5'- uGCGGgaUCGUgCUCCGCUACCUgCUGCa- -3'
miRNA:   3'- -CGCC--GGCAgGGGGCGAUGGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 139323 0.72 0.332046
Target:  5'- cGgGGCCGUCgCCCuCGCccucguCCUCcCGCUCc -3'
miRNA:   3'- -CgCCGGCAG-GGG-GCGau----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 139098 0.66 0.665556
Target:  5'- aGCGGaUCGUCgCCCGCgucACCUCguuggccaagaagCGCUUc -3'
miRNA:   3'- -CGCC-GGCAGgGGGCGa--UGGAG-------------GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 137231 0.7 0.471257
Target:  5'- gGCGGCCGUCCCggauCCGCgcgggucccggcGCCggcggCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGGG----GGCGa-----------UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 136725 0.68 0.572373
Target:  5'- uGCGGUgaUCCugaCCCGCUACCUgCGC-Cg -3'
miRNA:   3'- -CGCCGgcAGG---GGGCGAUGGAgGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 135724 0.66 0.685241
Target:  5'- gGCGGCCuUCUUCaUGCUcagggucuGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGcAGGGG-GCGA--------UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 135360 0.73 0.314415
Target:  5'- aCGGCgGUCCCCCuGCgucuacagcaccuCCUaCCGCUCa -3'
miRNA:   3'- cGCCGgCAGGGGG-CGau-----------GGA-GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.