miRNA display CGI


Results 121 - 140 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 135250 0.7 0.430719
Target:  5'- -aGGCCGUCgUCCGC-GCCg-CGCUCg -3'
miRNA:   3'- cgCCGGCAGgGGGCGaUGGagGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 134698 0.67 0.619336
Target:  5'- cGCGGaCGUCCuCUCGCgggcGCuCUCCGCc- -3'
miRNA:   3'- -CGCCgGCAGG-GGGCGa---UG-GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 134345 0.66 0.713059
Target:  5'- cGCGGCCGagcUCCagaCCCGC-ACCguccacgagCUGUUCg -3'
miRNA:   3'- -CGCCGGC---AGG---GGGCGaUGGa--------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 134251 0.68 0.563067
Target:  5'- gGCGGCCGagccgCCCCCug-GCCUUCGUcgUCc -3'
miRNA:   3'- -CGCCGGCa----GGGGGcgaUGGAGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 134090 0.71 0.398547
Target:  5'- uCGGauccgCGUCCCCgGC-GCCUaCCGCUCg -3'
miRNA:   3'- cGCCg----GCAGGGGgCGaUGGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 133898 0.67 0.638219
Target:  5'- cCGGCgGUCCCgggCGCUggccuACCUCCuGCUg -3'
miRNA:   3'- cGCCGgCAGGGg--GCGA-----UGGAGG-CGAg -5'
8959 3' -63.6 NC_002512.2 + 133698 0.68 0.581715
Target:  5'- cGCGGCCGcCUCCCGg-ACCaCCGgaCg -3'
miRNA:   3'- -CGCCGGCaGGGGGCgaUGGaGGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 133659 0.68 0.581715
Target:  5'- gGCGGUCG-CCgCCGCcGCCgcggCCGC-Cg -3'
miRNA:   3'- -CGCCGGCaGGgGGCGaUGGa---GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 133598 0.68 0.572373
Target:  5'- aGCgGGCCGgCCuCCUGCggACCUaCgGCUCg -3'
miRNA:   3'- -CG-CCGGCaGG-GGGCGa-UGGA-GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 133257 0.68 0.578909
Target:  5'- cCGGUCGcgguuuccucgcccUCCCCCGCgu-CUCCGCg- -3'
miRNA:   3'- cGCCGGC--------------AGGGGGCGaugGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 132028 0.7 0.438997
Target:  5'- gGCGGguCCGUCUCggUCGUcGCCUCCGCUUc -3'
miRNA:   3'- -CGCC--GGCAGGG--GGCGaUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 131785 0.71 0.422533
Target:  5'- -aGGUCGUCCCgCGCcguCCccgucaUCCGCUCg -3'
miRNA:   3'- cgCCGGCAGGGgGCGau-GG------AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 130932 0.68 0.581715
Target:  5'- uCGGCCcgGUUCCCCGCccgACUgcaUCCgGCUCu -3'
miRNA:   3'- cGCCGG--CAGGGGGCGa--UGG---AGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 129874 0.67 0.632553
Target:  5'- gGCGGCgGgggauucgccgucgCCCUCGCcgACgaUCCGCUCu -3'
miRNA:   3'- -CGCCGgCa-------------GGGGGCGa-UGg-AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 129797 0.67 0.609904
Target:  5'- cCGGCaGUCCCCC-CUuccGCCUCUuCUCg -3'
miRNA:   3'- cGCCGgCAGGGGGcGA---UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 129587 0.67 0.619336
Target:  5'- uCGGCCccgucgCCCCCGaCgaacucGCC-CCGCUCg -3'
miRNA:   3'- cGCCGGca----GGGGGC-Ga-----UGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 129114 0.66 0.657086
Target:  5'- gGCgGGCgGUCCUCUGCgacuacaGCCUCgCGCa- -3'
miRNA:   3'- -CG-CCGgCAGGGGGCGa------UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 128426 0.68 0.544584
Target:  5'- uCGGCCGguguccaccCCCCCGCUcucggcgucGCCgcgCCGC-Cg -3'
miRNA:   3'- cGCCGGCa--------GGGGGCGA---------UGGa--GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 128029 0.73 0.292442
Target:  5'- uGCGGCCGggUCgCUCGCUGCCUCUGg-- -3'
miRNA:   3'- -CGCCGGC--AGgGGGCGAUGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 127751 0.67 0.632553
Target:  5'- cGCGGCCGUagacggccaggguccCCCuCCGacgGCCgaggCCGCa- -3'
miRNA:   3'- -CGCCGGCA---------------GGG-GGCga-UGGa---GGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.