miRNA display CGI


Results 141 - 160 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 127682 0.75 0.240107
Target:  5'- cCGGCCGcggcgaUCUCCCGCUucuCCUCCucGCUCa -3'
miRNA:   3'- cGCCGGC------AGGGGGCGAu--GGAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 126825 0.7 0.464364
Target:  5'- uGCGagguGCCGUUCCCCGCgcuccUGCCcCCGgUCu -3'
miRNA:   3'- -CGC----CGGCAGGGGGCG-----AUGGaGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 126677 0.68 0.572373
Target:  5'- cGCGaGCCG-CCUCgGaUACCcCCGCUCg -3'
miRNA:   3'- -CGC-CGGCaGGGGgCgAUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 126411 0.66 0.713059
Target:  5'- cGCGGCCG-CCgCCGagACCcgagCCGCg- -3'
miRNA:   3'- -CGCCGGCaGGgGGCgaUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 121934 0.7 0.447366
Target:  5'- gGCGGCgGUCCcggaCCCGCggcgaugAUgUUCGCUCa -3'
miRNA:   3'- -CGCCGgCAGG----GGGCGa------UGgAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 120841 0.7 0.472988
Target:  5'- cCGGUCGUCCCCCGa-GCCcccCCGgUCc -3'
miRNA:   3'- cGCCGGCAGGGGGCgaUGGa--GGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 120530 0.68 0.553802
Target:  5'- cGCGGCUuUCCCCCGgcGgCUCC-CUCg -3'
miRNA:   3'- -CGCCGGcAGGGGGCgaUgGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 120262 0.7 0.464364
Target:  5'- uUGGCCGUCUUgCGC-ACCUCCGaguUCa -3'
miRNA:   3'- cGCCGGCAGGGgGCGaUGGAGGCg--AG- -5'
8959 3' -63.6 NC_002512.2 + 119386 0.67 0.647657
Target:  5'- cGCGGCgG-CCCugcugcagggCCGCgUGCCgCUGCUCg -3'
miRNA:   3'- -CGCCGgCaGGG----------GGCG-AUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 118995 0.67 0.638219
Target:  5'- uGCGGCUGgCCUCCGCcaagcGCCUCCu--- -3'
miRNA:   3'- -CGCCGGCaGGGGGCGa----UGGAGGcgag -5'
8959 3' -63.6 NC_002512.2 + 118703 0.67 0.619336
Target:  5'- cGUGGgCuUCCCCCGCcug--CCGCUCg -3'
miRNA:   3'- -CGCCgGcAGGGGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 117965 0.67 0.619336
Target:  5'- cGUGGaCGcUCCCCGCcugGCCgugCUGCUCg -3'
miRNA:   3'- -CGCCgGCaGGGGGCGa--UGGa--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 116630 0.72 0.332046
Target:  5'- cCGGCCGcCCCCCucGCUGCCgagGCUCc -3'
miRNA:   3'- cGCCGGCaGGGGG--CGAUGGaggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 114485 0.66 0.713059
Target:  5'- aUGGCCGUCa-CCGCguUCUCCuuGCUCa -3'
miRNA:   3'- cGCCGGCAGggGGCGauGGAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 113166 0.66 0.670255
Target:  5'- cGCGGCCGggcgggacgcgaCCgGCgucGCCgUCCGCUCc -3'
miRNA:   3'- -CGCCGGCagg---------GGgCGa--UGG-AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 111752 0.66 0.685241
Target:  5'- cGCGGuuCCG-CCCCCGCccCCUCCcCgUCa -3'
miRNA:   3'- -CGCC--GGCaGGGGGCGauGGAGGcG-AG- -5'
8959 3' -63.6 NC_002512.2 + 110935 0.67 0.638219
Target:  5'- cGCcGCCG-CCCCaCGCUccCCUCgaGCUCg -3'
miRNA:   3'- -CGcCGGCaGGGG-GCGAu-GGAGg-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 110333 0.67 0.647657
Target:  5'- cGCGGuCCGcccggUCCCCGCU-CC-CCGCc- -3'
miRNA:   3'- -CGCC-GGCa----GGGGGCGAuGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 109258 0.71 0.383049
Target:  5'- cCGG-CGUCCCgucCCGCcGCCUCcCGCUCu -3'
miRNA:   3'- cGCCgGCAGGG---GGCGaUGGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 109096 0.68 0.544584
Target:  5'- cGCcGCCGUCCCgCCGCccccGCCgacggCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG-GGCGa---UGGa----GGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.