miRNA display CGI


Results 81 - 100 of 264 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 1693 0.69 0.508254
Target:  5'- cGCGGCCucgaaguagGUCUCCCGgacggUGCCgcucCCGCUCc -3'
miRNA:   3'- -CGCCGG---------CAGGGGGCg----AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 33865 0.69 0.508254
Target:  5'- gGCGaGCCgGUCCCCCcCUucGCgUCCGCg- -3'
miRNA:   3'- -CGC-CGG-CAGGGGGcGA--UGgAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 2417 0.69 0.517246
Target:  5'- cGCGGCCGgccgCCCCCG--GCCUCUcccccgGCa- -3'
miRNA:   3'- -CGCCGGCa---GGGGGCgaUGGAGG------CGag -5'
8959 3' -63.6 NC_002512.2 + 68994 0.69 0.517246
Target:  5'- cCGGCCG--CCCCGCUucccgaacCCUCCGC-Cg -3'
miRNA:   3'- cGCCGGCagGGGGCGAu-------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 102241 0.69 0.517246
Target:  5'- cCGGCCGUCCgagcgaCCCGauccCUUUCGCUCg -3'
miRNA:   3'- cGCCGGCAGG------GGGCgau-GGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 142013 0.69 0.518149
Target:  5'- gGCGGCCGUCUcuUCCGCggccgggggccggcgACCcgCCGCg- -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa--------------UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 2704 0.69 0.535415
Target:  5'- aGCGccuGCCGcUCCCCCgGCUGCUcguccugCCGUUCc -3'
miRNA:   3'- -CGC---CGGC-AGGGGG-CGAUGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 38592 0.69 0.499328
Target:  5'- cCGGCCcccGUCCCCCGCc-CCgCCGCc- -3'
miRNA:   3'- cGCCGG---CAGGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 18093 0.69 0.490474
Target:  5'- cGCGGCgGgacggCCCCCGCggccacccggGCCUCCacgucCUCc -3'
miRNA:   3'- -CGCCGgCa----GGGGGCGa---------UGGAGGc----GAG- -5'
8959 3' -63.6 NC_002512.2 + 55560 0.69 0.490474
Target:  5'- cGCGGCgGaCCCCCGCcUGCUgacccacgucCCGCUg -3'
miRNA:   3'- -CGCCGgCaGGGGGCG-AUGGa---------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 71028 0.7 0.448207
Target:  5'- cCGGCCGgucgacgacgacgucCCCCCGCUcCC-CCGCgUCa -3'
miRNA:   3'- cGCCGGCa--------------GGGGGCGAuGGaGGCG-AG- -5'
8959 3' -63.6 NC_002512.2 + 85582 0.7 0.463506
Target:  5'- aGCGGCCGggagagcgCgUCCGCguucgggUGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCa-------GgGGGCG-------AUGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 86156 0.7 0.464364
Target:  5'- cGCGGCCG-CCUCCGagGCC-CUGCUg -3'
miRNA:   3'- -CGCCGGCaGGGGGCgaUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 120262 0.7 0.464364
Target:  5'- uUGGCCGUCUUgCGC-ACCUCCGaguUCa -3'
miRNA:   3'- cGCCGGCAGGGgGCGaUGGAGGCg--AG- -5'
8959 3' -63.6 NC_002512.2 + 126825 0.7 0.464364
Target:  5'- uGCGagguGCCGUUCCCCGCgcuccUGCCcCCGgUCu -3'
miRNA:   3'- -CGC----CGGCAGGGGGCG-----AUGGaGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 137231 0.7 0.471257
Target:  5'- gGCGGCCGUCCCggauCCGCgcgggucccggcGCCggcggCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGGG----GGCGa-----------UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 120841 0.7 0.472988
Target:  5'- cCGGUCGUCCCCCGa-GCCcccCCGgUCc -3'
miRNA:   3'- cGCCGGCAGGGGGCgaUGGa--GGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 139879 0.69 0.481692
Target:  5'- uGCGGgaUCGUgCUCCGCUACCUgCUGCa- -3'
miRNA:   3'- -CGCC--GGCAgGGGGCGAUGGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 79348 0.69 0.481692
Target:  5'- cGCGGCggCGUaCCCUCGCgGCCgCCGCg- -3'
miRNA:   3'- -CGCCG--GCA-GGGGGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 25120 0.68 0.544584
Target:  5'- cCGGUCGUCCCCgCGCcccagGCCgggaUCGCUg -3'
miRNA:   3'- cGCCGGCAGGGG-GCGa----UGGa---GGCGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.