miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 134251 0.68 0.563067
Target:  5'- gGCGGCCGagccgCCCCCug-GCCUUCGUcgUCc -3'
miRNA:   3'- -CGCCGGCa----GGGGGcgaUGGAGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 223947 0.68 0.563067
Target:  5'- cGCGGCUGUgaCCCCUGCgucCCUaUCGCa- -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGau-GGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 102241 0.69 0.517246
Target:  5'- cCGGCCGUCCgagcgaCCCGauccCUUUCGCUCg -3'
miRNA:   3'- cGCCGGCAGG------GGGCgau-GGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 68994 0.69 0.517246
Target:  5'- cCGGCCG--CCCCGCUucccgaacCCUCCGC-Cg -3'
miRNA:   3'- cGCCGGCagGGGGCGAu-------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 2417 0.69 0.517246
Target:  5'- cGCGGCCGgccgCCCCCG--GCCUCUcccccgGCa- -3'
miRNA:   3'- -CGCCGGCa---GGGGGCgaUGGAGG------CGag -5'
8959 3' -63.6 NC_002512.2 + 126825 0.7 0.464364
Target:  5'- uGCGagguGCCGUUCCCCGCgcuccUGCCcCCGgUCu -3'
miRNA:   3'- -CGC----CGGCAGGGGGCG-----AUGGaGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 137231 0.7 0.471257
Target:  5'- gGCGGCCGUCCCggauCCGCgcgggucccggcGCCggcggCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGGG----GGCGa-----------UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 120841 0.7 0.472988
Target:  5'- cCGGUCGUCCCCCGa-GCCcccCCGgUCc -3'
miRNA:   3'- cGCCGGCAGGGGGCgaUGGa--GGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 139879 0.69 0.481692
Target:  5'- uGCGGgaUCGUgCUCCGCUACCUgCUGCa- -3'
miRNA:   3'- -CGCC--GGCAgGGGGCGAUGGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 79348 0.69 0.481692
Target:  5'- cGCGGCggCGUaCCCUCGCgGCCgCCGCg- -3'
miRNA:   3'- -CGCCG--GCA-GGGGGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 55560 0.69 0.490474
Target:  5'- cGCGGCgGaCCCCCGCcUGCUgacccacgucCCGCUg -3'
miRNA:   3'- -CGCCGgCaGGGGGCG-AUGGa---------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 18093 0.69 0.490474
Target:  5'- cGCGGCgGgacggCCCCCGCggccacccggGCCUCCacgucCUCc -3'
miRNA:   3'- -CGCCGgCa----GGGGGCGa---------UGGAGGc----GAG- -5'
8959 3' -63.6 NC_002512.2 + 38592 0.69 0.499328
Target:  5'- cCGGCCcccGUCCCCCGCc-CCgCCGCc- -3'
miRNA:   3'- cGCCGG---CAGGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 79827 0.69 0.499328
Target:  5'- gGCGGCgGUCCCCC-CUcccGCC-CCGUcgUCc -3'
miRNA:   3'- -CGCCGgCAGGGGGcGA---UGGaGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 107676 0.69 0.499328
Target:  5'- cGUcGCCGUCCCCUuCUggaucuccGCCUCCGC-Ca -3'
miRNA:   3'- -CGcCGGCAGGGGGcGA--------UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 40116 0.69 0.505569
Target:  5'- aCGGCgggaggacggauuuUGUCCCCCGCcucgaagACCUCCuCUCc -3'
miRNA:   3'- cGCCG--------------GCAGGGGGCGa------UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 1693 0.69 0.508254
Target:  5'- cGCGGCCucgaaguagGUCUCCCGgacggUGCCgcucCCGCUCc -3'
miRNA:   3'- -CGCCGG---------CAGGGGGCg----AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 33865 0.69 0.508254
Target:  5'- gGCGaGCCgGUCCCCCcCUucGCgUCCGCg- -3'
miRNA:   3'- -CGC-CGG-CAGGGGGcGA--UGgAGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.