Results 161 - 180 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 204676 | 0.66 | 0.703836 |
Target: 5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3' miRNA: 3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 222517 | 0.66 | 0.703836 |
Target: 5'- cUGGCCG-CCCgCCGCgGCCgCCGUc- -3' miRNA: 3'- cGCCGGCaGGG-GGCGaUGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 227847 | 0.66 | 0.703836 |
Target: 5'- cGCaGCCGaUCaCCCUGCUGucgcuCCUCCuggugccgGCUCa -3' miRNA: 3'- -CGcCGGC-AG-GGGGCGAU-----GGAGG--------CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 214235 | 0.66 | 0.711219 |
Target: 5'- gGCGGCuCGUcggcucgCCgCCCGCgGCCgaggaguUCCGCUg -3' miRNA: 3'- -CGCCG-GCA-------GG-GGGCGaUGG-------AGGCGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 46017 | 0.66 | 0.713059 |
Target: 5'- aCGGUCGUCgUgUCGCUGaauCCUuuGCUCg -3' miRNA: 3'- cGCCGGCAG-GgGGCGAU---GGAggCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 224408 | 0.66 | 0.694561 |
Target: 5'- cGCGcGCCacgagGUCCCCgaguuCUGCCcccuUCCGCUCu -3' miRNA: 3'- -CGC-CGG-----CAGGGGgc---GAUGG----AGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 149176 | 0.66 | 0.694561 |
Target: 5'- cGCGGgcCCGcgcgCCCUCGCcccCCggacgCCGCUCg -3' miRNA: 3'- -CGCC--GGCa---GGGGGCGau-GGa----GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 101477 | 0.66 | 0.666497 |
Target: 5'- cCGGCCGagacCCCCCGUccCCggacgagUCGCUCu -3' miRNA: 3'- cGCCGGCa---GGGGGCGauGGa------GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 146120 | 0.66 | 0.666497 |
Target: 5'- gGCGgcGCCGUCUUCUGC-ACCUgCCGC-Cg -3' miRNA: 3'- -CGC--CGGCAGGGGGCGaUGGA-GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 187574 | 0.66 | 0.666497 |
Target: 5'- cGCGcGUCGagauccCCCCCGCUcCCUCUGUc- -3' miRNA: 3'- -CGC-CGGCa-----GGGGGCGAuGGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 113166 | 0.66 | 0.670255 |
Target: 5'- cGCGGCCGggcgggacgcgaCCgGCgucGCCgUCCGCUCc -3' miRNA: 3'- -CGCCGGCagg---------GGgCGa--UGG-AGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 207657 | 0.66 | 0.670255 |
Target: 5'- gGCGGCCGUgguggcgucccgggcUCuCCCGCcgGCCgaagCGCUCc -3' miRNA: 3'- -CGCCGGCA---------------GG-GGGCGa-UGGag--GCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 74595 | 0.66 | 0.675884 |
Target: 5'- -aGGCCGgggCCCUCcgucggcucgaGCcGCCUCgGCUCc -3' miRNA: 3'- cgCCGGCa--GGGGG-----------CGaUGGAGgCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 153311 | 0.66 | 0.675884 |
Target: 5'- uCGGCCGgUUCCCGCUgggguGgUUCCGCUg -3' miRNA: 3'- cGCCGGCaGGGGGCGA-----UgGAGGCGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 197340 | 0.66 | 0.684307 |
Target: 5'- gGCGGCUGgagaagaUCCCCCaCUGCCcgcacgUCUGCa- -3' miRNA: 3'- -CGCCGGC-------AGGGGGcGAUGG------AGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 201175 | 0.66 | 0.685241 |
Target: 5'- uUGaGCCGggacCCCUCGCUGCa-CCGCUUc -3' miRNA: 3'- cGC-CGGCa---GGGGGCGAUGgaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 111752 | 0.66 | 0.685241 |
Target: 5'- cGCGGuuCCG-CCCCCGCccCCUCCcCgUCa -3' miRNA: 3'- -CGCC--GGCaGGGGGCGauGGAGGcG-AG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 158315 | 0.66 | 0.685241 |
Target: 5'- cGCGGUCGUCCggcgcgagUCCGCgcuccggACCgucuucgacacCCGCUCc -3' miRNA: 3'- -CGCCGGCAGG--------GGGCGa------UGGa----------GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 157878 | 0.66 | 0.693631 |
Target: 5'- gGCGGCCuggcGUUCCuccuguaCCGCUGCCacgaCCGCa- -3' miRNA: 3'- -CGCCGG----CAGGG-------GGCGAUGGa---GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 225810 | 0.66 | 0.694561 |
Target: 5'- gGCGGCCGgguggCCUgggaccucgagCCGCgggggAUCgagCCGCUCc -3' miRNA: 3'- -CGCCGGCa----GGG-----------GGCGa----UGGa--GGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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