miRNA display CGI


Results 61 - 80 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 223470 0.67 0.647657
Target:  5'- aCGGCCGccuUCCCCagCGCcGCCgCCGcCUCc -3'
miRNA:   3'- cGCCGGC---AGGGG--GCGaUGGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 98842 0.67 0.647657
Target:  5'- cGCGgcGCCGuccUCCCCCGCgGCC-CCGacgccCUCg -3'
miRNA:   3'- -CGC--CGGC---AGGGGGCGaUGGaGGC-----GAG- -5'
8959 3' -63.6 NC_002512.2 + 204676 0.66 0.703836
Target:  5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3'
miRNA:   3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 194570 0.66 0.70291
Target:  5'- -aGGCCGUgCCCcucaaggucaaCCGCUAcaugaagaugaucCCUCCGC-Cg -3'
miRNA:   3'- cgCCGGCA-GGG-----------GGCGAU-------------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 192909 0.66 0.694561
Target:  5'- cGCGGCgGUCCagaGCcGCCUCCGa-- -3'
miRNA:   3'- -CGCCGgCAGGgggCGaUGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 149176 0.66 0.694561
Target:  5'- cGCGGgcCCGcgcgCCCUCGCcccCCggacgCCGCUCg -3'
miRNA:   3'- -CGCC--GGCa---GGGGGCGau-GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 201175 0.66 0.685241
Target:  5'- uUGaGCCGggacCCCUCGCUGCa-CCGCUUc -3'
miRNA:   3'- cGC-CGGCa---GGGGGCGAUGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 74595 0.66 0.675884
Target:  5'- -aGGCCGgggCCCUCcgucggcucgaGCcGCCUCgGCUCc -3'
miRNA:   3'- cgCCGGCa--GGGGG-----------CGaUGGAGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146120 0.66 0.666497
Target:  5'- gGCGgcGCCGUCUUCUGC-ACCUgCCGC-Cg -3'
miRNA:   3'- -CGC--CGGCAGGGGGCGaUGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 105690 0.66 0.660852
Target:  5'- cGCGGUgccucUGUCCCCgGCggacgagcagccaggUGCaCUCcCGCUCg -3'
miRNA:   3'- -CGCCG-----GCAGGGGgCG---------------AUG-GAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 213002 0.68 0.552878
Target:  5'- cGCGGCCGUCgggCCCGggGCCcucucgaggugcgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGg--GGGCgaUGG-------------AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 216211 0.68 0.553802
Target:  5'- cGCGGCCGUCgCCUCGUccgggaGCUggagCCGCg- -3'
miRNA:   3'- -CGCCGGCAG-GGGGCGa-----UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 180317 0.67 0.638219
Target:  5'- aGCGGCguCGUCagguCCCGCUGCgccuuCUCC-CUCg -3'
miRNA:   3'- -CGCCG--GCAGg---GGGCGAUG-----GAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 205032 0.67 0.628776
Target:  5'- cGgGGCCGcgUCCgCCGCcgACCggCCGCg- -3'
miRNA:   3'- -CgCCGGC--AGGgGGCGa-UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 149889 0.67 0.600486
Target:  5'- cCGGCUG-CCgCUGCcuggACCUCCGCg- -3'
miRNA:   3'- cGCCGGCaGGgGGCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 153268 0.67 0.600486
Target:  5'- uGCGGCgGgUCCUgguCgGCUGgCUCCGCUg -3'
miRNA:   3'- -CGCCGgC-AGGG---GgCGAUgGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 219373 0.68 0.591088
Target:  5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3'
miRNA:   3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 222130 0.68 0.581715
Target:  5'- cGCGGCCGacuaccgCCCCgGCUccGCCcccgaggaCCGCUa -3'
miRNA:   3'- -CGCCGGCa------GGGGgCGA--UGGa-------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 196196 0.68 0.572373
Target:  5'- aCGGCCGggUCCCUgGCgaGCCUCCGg-- -3'
miRNA:   3'- cGCCGGC--AGGGGgCGa-UGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 126677 0.68 0.572373
Target:  5'- cGCGaGCCG-CCUCgGaUACCcCCGCUCg -3'
miRNA:   3'- -CGC-CGGCaGGGGgCgAUGGaGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.