miRNA display CGI


Results 101 - 120 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 147968 0.69 0.508254
Target:  5'- cGUcGUCGUCCCCCuccacgGCgcacgACCUCCGCg- -3'
miRNA:   3'- -CGcCGGCAGGGGG------CGa----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 215021 0.69 0.481692
Target:  5'- --cGCCuGUCCCgCGaCUACCUCUGCUg -3'
miRNA:   3'- cgcCGG-CAGGGgGC-GAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 219438 0.7 0.464364
Target:  5'- gGCGGCC-UCCUCCGC-GCCcCCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 200514 0.7 0.454972
Target:  5'- cGgGGCuCGUCCUCaCGCUGCUguccgugUCCGuCUCg -3'
miRNA:   3'- -CgCCG-GCAGGGG-GCGAUGG-------AGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 192587 0.7 0.438997
Target:  5'- aGCGGaCCGUCCCgCUGCUGCggCgCGCg- -3'
miRNA:   3'- -CGCC-GGCAGGG-GGCGAUGgaG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 318 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 174401 0.67 0.600486
Target:  5'- cGUGGCgCGUUCCCgcggCGCcgggGCCUCCGUc- -3'
miRNA:   3'- -CGCCG-GCAGGGG----GCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 194621 0.66 0.703836
Target:  5'- cGCGGCCGUCg-CCGCgggggACCUgcCCGUccUCu -3'
miRNA:   3'- -CGCCGGCAGggGGCGa----UGGA--GGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 98249 0.66 0.701058
Target:  5'- cGCGGaccCCGUacuucccguccuugCCCCCGCg----CCGCUCg -3'
miRNA:   3'- -CGCC---GGCA--------------GGGGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 146328 0.66 0.694561
Target:  5'- aCGGCCGcUCCgUCCGCaug--CCGCUCa -3'
miRNA:   3'- cGCCGGC-AGG-GGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 225810 0.66 0.694561
Target:  5'- gGCGGCCGgguggCCUgggaccucgagCCGCgggggAUCgagCCGCUCc -3'
miRNA:   3'- -CGCCGGCa----GGG-----------GGCGa----UGGa--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 197340 0.66 0.684307
Target:  5'- gGCGGCUGgagaagaUCCCCCaCUGCCcgcacgUCUGCa- -3'
miRNA:   3'- -CGCCGGC-------AGGGGGcGAUGG------AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 207657 0.66 0.670255
Target:  5'- gGCGGCCGUgguggcgucccgggcUCuCCCGCcgGCCgaagCGCUCc -3'
miRNA:   3'- -CGCCGGCA---------------GG-GGGCGa-UGGag--GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 101477 0.66 0.666497
Target:  5'- cCGGCCGagacCCCCCGUccCCggacgagUCGCUCu -3'
miRNA:   3'- cGCCGGCa---GGGGGCGauGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 219729 0.66 0.657086
Target:  5'- gGCGGCCcccGUgCCUCGCcgACCUCUucuGCUg -3'
miRNA:   3'- -CGCCGG---CAgGGGGCGa-UGGAGG---CGAg -5'
8959 3' -63.6 NC_002512.2 + 180895 0.67 0.647657
Target:  5'- cGCaGGCCGUCUUCCaGCUccgcguUCUCCGC-Ca -3'
miRNA:   3'- -CG-CCGGCAGGGGG-CGAu-----GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 98842 0.67 0.647657
Target:  5'- cGCGgcGCCGuccUCCCCCGCgGCC-CCGacgccCUCg -3'
miRNA:   3'- -CGC--CGGC---AGGGGGCGaUGGaGGC-----GAG- -5'
8959 3' -63.6 NC_002512.2 + 180317 0.67 0.638219
Target:  5'- aGCGGCguCGUCagguCCCGCUGCgccuuCUCC-CUCg -3'
miRNA:   3'- -CGCCG--GCAGg---GGGCGAUG-----GAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 205032 0.67 0.628776
Target:  5'- cGgGGCCGcgUCCgCCGCcgACCggCCGCg- -3'
miRNA:   3'- -CgCCGGC--AGGgGGCGa-UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 224720 0.67 0.600486
Target:  5'- cCGGCCGcCgCCCCGgUcgcGCCgcugCCGUUCu -3'
miRNA:   3'- cGCCGGCaG-GGGGCgA---UGGa---GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.