miRNA display CGI


Results 121 - 140 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 98144 0.66 0.657086
Target:  5'- cGCGGCCGcccgCCCCgGCggucgCCGCg- -3'
miRNA:   3'- -CGCCGGCa---GGGGgCGauggaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 223470 0.67 0.647657
Target:  5'- aCGGCCGccuUCCCCagCGCcGCCgCCGcCUCc -3'
miRNA:   3'- cGCCGGC---AGGGG--GCGaUGGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 150686 0.7 0.438997
Target:  5'- cGCGGCgGUCgCCCCGacggACCgUUgGCUCu -3'
miRNA:   3'- -CGCCGgCAG-GGGGCga--UGG-AGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 200514 0.7 0.454972
Target:  5'- cGgGGCuCGUCCUCaCGCUGCUguccgugUCCGuCUCg -3'
miRNA:   3'- -CgCCG-GCAGGGG-GCGAUGG-------AGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 184770 0.7 0.456672
Target:  5'- cGUGGUCGUCgaCCCCGaggacguggcccggGCCUCCGCg- -3'
miRNA:   3'- -CGCCGGCAG--GGGGCga------------UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 180317 0.67 0.638219
Target:  5'- aGCGGCguCGUCagguCCCGCUGCgccuuCUCC-CUCg -3'
miRNA:   3'- -CGCCG--GCAGg---GGGCGAUG-----GAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 196075 0.67 0.619336
Target:  5'- cGgGGCCuUCgCCCUGCUcgcgcuCCUCUGCUg -3'
miRNA:   3'- -CgCCGGcAG-GGGGCGAu-----GGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 129797 0.67 0.609904
Target:  5'- cCGGCaGUCCCCC-CUuccGCCUCUuCUCg -3'
miRNA:   3'- cGCCGgCAGGGGGcGA---UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 148449 0.67 0.600486
Target:  5'- gGgGGCCGggcCCCCCGCgggACggagCCGCg- -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--UGga--GGCGag -5'
8959 3' -63.6 NC_002512.2 + 219373 0.68 0.591088
Target:  5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3'
miRNA:   3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 146974 0.68 0.581715
Target:  5'- cGCGGCCGagaCUUCCGCUGCCUgaccaCCGa-- -3'
miRNA:   3'- -CGCCGGCa--GGGGGCGAUGGA-----GGCgag -5'
8959 3' -63.6 NC_002512.2 + 218289 0.68 0.572373
Target:  5'- uCGGCCucgggGUCCCCgGCccuggGCggCCGCUCg -3'
miRNA:   3'- cGCCGG-----CAGGGGgCGa----UGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 190568 0.68 0.571441
Target:  5'- gGCGGCCGUCUUCCacaccgacaacGUguggACCUuccugcggaucagCCGCUCg -3'
miRNA:   3'- -CGCCGGCAGGGGG-----------CGa---UGGA-------------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 216211 0.68 0.553802
Target:  5'- cGCGGCCGUCgCCUCGUccgggaGCUggagCCGCg- -3'
miRNA:   3'- -CGCCGGCAG-GGGGCGa-----UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 109096 0.68 0.544584
Target:  5'- cGCcGCCGUCCCgCCGCccccGCCgacggCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG-GGCGa---UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 193760 0.69 0.535415
Target:  5'- cGCGGUCGUCgCCuCCGU--CCUCUGUUUu -3'
miRNA:   3'- -CGCCGGCAG-GG-GGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 202023 0.69 0.517246
Target:  5'- cGgGGCCGggUCCCCCGCcgg-UCCgGCUCg -3'
miRNA:   3'- -CgCCGGC--AGGGGGCGauggAGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 172774 0.69 0.508254
Target:  5'- uCGGCgcacCCCCCGCUuCCUcgucCCGCUCg -3'
miRNA:   3'- cGCCGgca-GGGGGCGAuGGA----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 144320 0.69 0.499328
Target:  5'- cCGGCCG-CUCCCGCUcccgcGCCUCCu--- -3'
miRNA:   3'- cGCCGGCaGGGGGCGA-----UGGAGGcgag -5'
8959 3' -63.6 NC_002512.2 + 146604 0.69 0.490474
Target:  5'- gGCGGCCccagacgCCUCUGCUGCCgacgaUCCGC-Ca -3'
miRNA:   3'- -CGCCGGca-----GGGGGCGAUGG-----AGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.