miRNA display CGI


Results 141 - 160 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 219054 0.7 0.438997
Target:  5'- cGCGGCgCGgggCuCCCCGCggGCUUCgaGCUCg -3'
miRNA:   3'- -CGCCG-GCa--G-GGGGCGa-UGGAGg-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 149650 0.71 0.422533
Target:  5'- cCGGCCcgcacGUCCCggaGCUGCCcuaUCCGCUCc -3'
miRNA:   3'- cGCCGG-----CAGGGgg-CGAUGG---AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 220388 0.71 0.398547
Target:  5'- uGgGGCCGgCCgUCGuCUACCcgCCGCUCg -3'
miRNA:   3'- -CgCCGGCaGGgGGC-GAUGGa-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 95651 0.68 0.581715
Target:  5'- uCGGCCGcCCCCgGCacaGCCUCuCGUg- -3'
miRNA:   3'- cGCCGGCaGGGGgCGa--UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 100699 0.66 0.703836
Target:  5'- gGCGGCC-UCCUCCGCagcguCC-CCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGau---GGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 133257 0.68 0.578909
Target:  5'- cCGGUCGcgguuuccucgcccUCCCCCGCgu-CUCCGCg- -3'
miRNA:   3'- cGCCGGC--------------AGGGGGCGaugGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 139323 0.72 0.332046
Target:  5'- cGgGGCCGUCgCCCuCGCccucguCCUCcCGCUCc -3'
miRNA:   3'- -CgCCGGCAG-GGG-GCGau----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 4053 0.68 0.573306
Target:  5'- aGCGGCuCGaUCCCCCGCggcucgaggucccagGCCacccggCCGCcCg -3'
miRNA:   3'- -CGCCG-GC-AGGGGGCGa--------------UGGa-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 70957 0.66 0.713059
Target:  5'- gGCcGCCGgcgCCCCCGCcgaaGCCguacucggCCGCg- -3'
miRNA:   3'- -CGcCGGCa--GGGGGCGa---UGGa-------GGCGag -5'
8959 3' -63.6 NC_002512.2 + 134345 0.66 0.713059
Target:  5'- cGCGGCCGagcUCCagaCCCGC-ACCguccacgagCUGUUCg -3'
miRNA:   3'- -CGCCGGC---AGG---GGGCGaUGGa--------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 114485 0.66 0.713059
Target:  5'- aUGGCCGUCa-CCGCguUCUCCuuGCUCa -3'
miRNA:   3'- cGCCGGCAGggGGCGauGGAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 21080 0.66 0.713059
Target:  5'- gGCGGCgGUCCCgcuCCGggGCgaCCGC-Cg -3'
miRNA:   3'- -CGCCGgCAGGG---GGCgaUGgaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 126411 0.66 0.713059
Target:  5'- cGCGGCCG-CCgCCGagACCcgagCCGCg- -3'
miRNA:   3'- -CGCCGGCaGGgGGCgaUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 120262 0.7 0.464364
Target:  5'- uUGGCCGUCUUgCGC-ACCUCCGaguUCa -3'
miRNA:   3'- cGCCGGCAGGGgGCGaUGGAGGCg--AG- -5'
8959 3' -63.6 NC_002512.2 + 86156 0.7 0.464364
Target:  5'- cGCGGCCG-CCUCCGagGCC-CUGCUg -3'
miRNA:   3'- -CGCCGGCaGGGGGCgaUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 133598 0.68 0.572373
Target:  5'- aGCgGGCCGgCCuCCUGCggACCUaCgGCUCg -3'
miRNA:   3'- -CG-CCGGCaGG-GGGCGa-UGGA-GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 85582 0.7 0.463506
Target:  5'- aGCGGCCGggagagcgCgUCCGCguucgggUGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCa-------GgGGGCG-------AUGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 223947 0.68 0.563067
Target:  5'- cGCGGCUGUgaCCCCUGCgucCCUaUCGCa- -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGau-GGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 102097 0.68 0.563067
Target:  5'- cCGGCaCGUCuCCCUGUgcgGCCUCgGCcgUCg -3'
miRNA:   3'- cGCCG-GCAG-GGGGCGa--UGGAGgCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.