miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 76942 0.66 0.666497
Target:  5'- cGgGGaCCG-CUCCCGCUgaccgACCggggaCCGCUCc -3'
miRNA:   3'- -CgCC-GGCaGGGGGCGA-----UGGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 16538 0.66 0.666497
Target:  5'- cGCGGgCGUCCCCC--UGgCUCCGgauguaCUCg -3'
miRNA:   3'- -CGCCgGCAGGGGGcgAUgGAGGC------GAG- -5'
8959 3' -63.6 NC_002512.2 + 76702 0.66 0.694561
Target:  5'- uGCcGCCcUCCCcaCCGCUGCCcgCCGCc- -3'
miRNA:   3'- -CGcCGGcAGGG--GGCGAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 97757 0.66 0.666497
Target:  5'- gGCGGUCGUCUugCUCGCgGCCUaCCGggCg -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGaUGGA-GGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 129114 0.66 0.657086
Target:  5'- gGCgGGCgGUCCUCUGCgacuacaGCCUCgCGCa- -3'
miRNA:   3'- -CG-CCGgCAGGGGGCGa------UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 1937 0.66 0.666497
Target:  5'- cCGGC--UCCCCCGCgcuCCcCCGcCUCg -3'
miRNA:   3'- cGCCGgcAGGGGGCGau-GGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 1820 0.66 0.685241
Target:  5'- aGCccGUCGUCUCCCGCgccgcaGCCgUCCGCg- -3'
miRNA:   3'- -CGc-CGGCAGGGGGCGa-----UGG-AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 37276 0.66 0.670255
Target:  5'- gGCcGCCGUCgCCCGCcgcggcgcGCCgcagcagcgggacggUCCGCUCc -3'
miRNA:   3'- -CGcCGGCAGgGGGCGa-------UGG---------------AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 62621 0.66 0.672132
Target:  5'- gGCGGCCagcUUCCCCGCcaccuugaccaggACCUCuCGCcCg -3'
miRNA:   3'- -CGCCGGc--AGGGGGCGa------------UGGAG-GCGaG- -5'
8959 3' -63.6 NC_002512.2 + 44379 0.66 0.685241
Target:  5'- aGCGGCaggCCCCCGCgcaGCC-CgGCg- -3'
miRNA:   3'- -CGCCGgcaGGGGGCGa--UGGaGgCGag -5'
8959 3' -63.6 NC_002512.2 + 191668 0.66 0.694561
Target:  5'- -aGGCCGU-CUCCGCUAUCgUCGCg- -3'
miRNA:   3'- cgCCGGCAgGGGGCGAUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 4344 0.66 0.675884
Target:  5'- aGaaGUCGUCCUCCGC-GCCUcCCGC-Cg -3'
miRNA:   3'- -CgcCGGCAGGGGGCGaUGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 45337 0.66 0.694561
Target:  5'- -gGGCCGUCCgccggCCCGCgccgccggcugACC-CCGCg- -3'
miRNA:   3'- cgCCGGCAGG-----GGGCGa----------UGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 58048 0.66 0.675884
Target:  5'- cGCGGCCGgaccgUCCCgCGgUACCggaugCCGggCa -3'
miRNA:   3'- -CGCCGGC-----AGGGgGCgAUGGa----GGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 24382 0.66 0.685241
Target:  5'- aGUcGUCGUCCUCCGCgacGCCgucgUCCGcCUCu -3'
miRNA:   3'- -CGcCGGCAGGGGGCGa--UGG----AGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 139098 0.66 0.665556
Target:  5'- aGCGGaUCGUCgCCCGCgucACCUCguuggccaagaagCGCUUc -3'
miRNA:   3'- -CGCC-GGCAGgGGGCGa--UGGAG-------------GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 75164 0.66 0.656144
Target:  5'- cGCGGacgcaacgccguuCCGUCgCgCCGCUcgacGCCggacggCCGCUCg -3'
miRNA:   3'- -CGCC-------------GGCAGgG-GGCGA----UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 135724 0.66 0.685241
Target:  5'- gGCGGCCuUCUUCaUGCUcagggucuGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGcAGGGG-GCGA--------UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 73365 0.66 0.675884
Target:  5'- cGCcGCCGgaCCCCCGC-GCC-CCGC-Cg -3'
miRNA:   3'- -CGcCGGCa-GGGGGCGaUGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 920 0.66 0.657086
Target:  5'- uGCu-CCGUCUCCCGC--CCUCCGCc- -3'
miRNA:   3'- -CGccGGCAGGGGGCGauGGAGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.