miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 211041 1.11 0.000769
Target:  5'- cGCGGCCGUCCCCCGCUACCUCCGCUCg -3'
miRNA:   3'- -CGCCGGCAGGGGGCGAUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 147647 0.8 0.113757
Target:  5'- gGCGGCCG-CUCCCGCUACCgucaccggccCCGCUUc -3'
miRNA:   3'- -CGCCGGCaGGGGGCGAUGGa---------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 192954 0.8 0.116536
Target:  5'- cGCGGCCucGUCCCCCGgguCCUCcCGCUCu -3'
miRNA:   3'- -CGCCGG--CAGGGGGCgauGGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 172905 0.79 0.128293
Target:  5'- aCGGCUGUCCCCCGUggggACuCUCCaaGCUCg -3'
miRNA:   3'- cGCCGGCAGGGGGCGa---UG-GAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 143438 0.79 0.134575
Target:  5'- cGCGGCaccCGUCCCCCGUcccgcGCCccgUCCGCUCg -3'
miRNA:   3'- -CGCCG---GCAGGGGGCGa----UGG---AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 100029 0.79 0.134575
Target:  5'- cGCcGCCGUCCUCCGCcuccGCCUCCGcCUCc -3'
miRNA:   3'- -CGcCGGCAGGGGGCGa---UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 72074 0.76 0.195826
Target:  5'- cGCGGCCGgCCCCCGCagcgACCUgcacaCCGCcCg -3'
miRNA:   3'- -CGCCGGCaGGGGGCGa---UGGA-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 143208 0.75 0.229594
Target:  5'- -gGuGCCGUCCCCCucGCgcGCCgUCCGCUCg -3'
miRNA:   3'- cgC-CGGCAGGGGG--CGa-UGG-AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 29050 0.75 0.234801
Target:  5'- aCGcGCCGcgCCCCCGCUgACCUUCGCg- -3'
miRNA:   3'- cGC-CGGCa-GGGGGCGA-UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 127682 0.75 0.240107
Target:  5'- cCGGCCGcggcgaUCUCCCGCUucuCCUCCucGCUCa -3'
miRNA:   3'- cGCCGGC------AGGGGGCGAu--GGAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 185444 0.75 0.245513
Target:  5'- -aGGCCGUCCUguCCGC--CCUCUGCUCc -3'
miRNA:   3'- cgCCGGCAGGG--GGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 61769 0.75 0.251019
Target:  5'- cGCGGCCGggCCCCUcucCUACC-CUGCUCc -3'
miRNA:   3'- -CGCCGGCa-GGGGGc--GAUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 227793 0.75 0.251019
Target:  5'- cGCGGCCGUaCCgCCCGCUcccGCCcggcguggacUCCGCg- -3'
miRNA:   3'- -CGCCGGCA-GG-GGGCGA---UGG----------AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 12788 0.74 0.256627
Target:  5'- gGCGGCg--CCCCCGCUGCCcCUGCg- -3'
miRNA:   3'- -CGCCGgcaGGGGGCGAUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 177083 0.74 0.256627
Target:  5'- cGCGuCCGUcagCCCCCGCUGCguCUCCGCg- -3'
miRNA:   3'- -CGCcGGCA---GGGGGCGAUG--GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 147455 0.74 0.280087
Target:  5'- gGCGGCCGUCUgUCGCUGCugguCUUCGCg- -3'
miRNA:   3'- -CGCCGGCAGGgGGCGAUG----GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 2843 0.74 0.286212
Target:  5'- cCGGCCGUCCgCCCGUUccucGCUUCC-CUCc -3'
miRNA:   3'- cGCCGGCAGG-GGGCGA----UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 186509 0.74 0.286212
Target:  5'- cGCGGCCGUCCgggCCaGCgucgACCUCUGCg- -3'
miRNA:   3'- -CGCCGGCAGG---GGgCGa---UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 57233 0.73 0.292442
Target:  5'- cGCGGgCGUCCCcgcaggCCGCgUACCgCCGUUCg -3'
miRNA:   3'- -CGCCgGCAGGG------GGCG-AUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 128029 0.73 0.292442
Target:  5'- uGCGGCCGggUCgCUCGCUGCCUCUGg-- -3'
miRNA:   3'- -CGCCGGC--AGgGGGCGAUGGAGGCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.