miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 318 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 389 0.69 0.508254
Target:  5'- cCGGCCuccucucCCCCCGCcGCCUCuCGcCUCc -3'
miRNA:   3'- cGCCGGca-----GGGGGCGaUGGAG-GC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 920 0.66 0.657086
Target:  5'- uGCu-CCGUCUCCCGC--CCUCCGCc- -3'
miRNA:   3'- -CGccGGCAGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 1079 0.73 0.31842
Target:  5'- gGCGGCCgGUCuCCCCGUc-CCUCC-CUCu -3'
miRNA:   3'- -CGCCGG-CAG-GGGGCGauGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 1342 0.68 0.570509
Target:  5'- gGCuGCCGUCCgccuCCCGUgucguccucgucGCCUCCGuCUCu -3'
miRNA:   3'- -CGcCGGCAGG----GGGCGa-----------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 1693 0.69 0.508254
Target:  5'- cGCGGCCucgaaguagGUCUCCCGgacggUGCCgcucCCGCUCc -3'
miRNA:   3'- -CGCCGG---------CAGGGGGCg----AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 1820 0.66 0.685241
Target:  5'- aGCccGUCGUCUCCCGCgccgcaGCCgUCCGCg- -3'
miRNA:   3'- -CGc-CGGCAGGGGGCGa-----UGG-AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 1937 0.66 0.666497
Target:  5'- cCGGC--UCCCCCGCgcuCCcCCGcCUCg -3'
miRNA:   3'- cGCCGgcAGGGGGCGau-GGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 2417 0.69 0.517246
Target:  5'- cGCGGCCGgccgCCCCCG--GCCUCUcccccgGCa- -3'
miRNA:   3'- -CGCCGGCa---GGGGGCgaUGGAGG------CGag -5'
8959 3' -63.6 NC_002512.2 + 2704 0.69 0.535415
Target:  5'- aGCGccuGCCGcUCCCCCgGCUGCUcguccugCCGUUCc -3'
miRNA:   3'- -CGC---CGGC-AGGGGG-CGAUGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 2843 0.74 0.286212
Target:  5'- cCGGCCGUCCgCCCGUUccucGCUUCC-CUCc -3'
miRNA:   3'- cGCCGGCAGG-GGGCGA----UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 3020 0.71 0.422533
Target:  5'- gGCGGCCGcuUCUCCCuCU--UUCCGCUCg -3'
miRNA:   3'- -CGCCGGC--AGGGGGcGAugGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 3163 0.73 0.32518
Target:  5'- cGCcGUCGUCgCCCGCgGCCUCCcgucGCUCg -3'
miRNA:   3'- -CGcCGGCAGgGGGCGaUGGAGG----CGAG- -5'
8959 3' -63.6 NC_002512.2 + 4053 0.68 0.573306
Target:  5'- aGCGGCuCGaUCCCCCGCggcucgaggucccagGCCacccggCCGCcCg -3'
miRNA:   3'- -CGCCG-GC-AGGGGGCGa--------------UGGa-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 4344 0.66 0.675884
Target:  5'- aGaaGUCGUCCUCCGC-GCCUcCCGC-Cg -3'
miRNA:   3'- -CgcCGGCAGGGGGCGaUGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 5348 0.68 0.553802
Target:  5'- -aGGCCaugGUCCCCCGggACCugugguccUCCgGCUCu -3'
miRNA:   3'- cgCCGG---CAGGGGGCgaUGG--------AGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 5631 0.67 0.628776
Target:  5'- cGCGGgCGUCgggcgccgaCCCGCcuCCcCCGCUCa -3'
miRNA:   3'- -CGCCgGCAGg--------GGGCGauGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 5989 0.67 0.609904
Target:  5'- cCGcGCCG-CUCCCGCU-CCUCCucCUCg -3'
miRNA:   3'- cGC-CGGCaGGGGGCGAuGGAGGc-GAG- -5'
8959 3' -63.6 NC_002512.2 + 6089 0.67 0.600486
Target:  5'- gGCGGUcgccgccgaCGUCCCCgGCgACgUCCGgUCc -3'
miRNA:   3'- -CGCCG---------GCAGGGGgCGaUGgAGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 7472 0.71 0.383049
Target:  5'- cGCGGCUGccggCCCCCGCcgaaGCCgcggCGCUCc -3'
miRNA:   3'- -CGCCGGCa---GGGGGCGa---UGGag--GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.