miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 31868 0.71 0.422533
Target:  5'- cGCGcGCgCGUCCCUCGCccccguCCgucgcCCGCUCg -3'
miRNA:   3'- -CGC-CG-GCAGGGGGCGau----GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 3163 0.73 0.32518
Target:  5'- cGCcGUCGUCgCCCGCgGCCUCCcgucGCUCg -3'
miRNA:   3'- -CGcCGGCAGgGGGCGaUGGAGG----CGAG- -5'
8959 3' -63.6 NC_002512.2 + 116630 0.72 0.332046
Target:  5'- cCGGCCGcCCCCCucGCUGCCgagGCUCc -3'
miRNA:   3'- cGCCGGCaGGGGG--CGAUGGaggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 139323 0.72 0.332046
Target:  5'- cGgGGCCGUCgCCCuCGCccucguCCUCcCGCUCc -3'
miRNA:   3'- -CgCCGGCAG-GGG-GCGau----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 28243 0.72 0.373944
Target:  5'- cGgGGCCGUCgCgCCGCgaguacgacggcGCCUaCCGCUCg -3'
miRNA:   3'- -CgCCGGCAGgG-GGCGa-----------UGGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 7472 0.71 0.383049
Target:  5'- cGCGGCUGccggCCCCCGCcgaaGCCgcggCGCUCc -3'
miRNA:   3'- -CGCCGGCa---GGGGGCGa---UGGag--GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 59057 0.71 0.390748
Target:  5'- -gGGUCG-CCgCCGCUGCCgCCGCUg -3'
miRNA:   3'- cgCCGGCaGGgGGCGAUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 39671 0.71 0.398547
Target:  5'- cGUGGCCGUCCCggacgaccgcgCCGCcgACCuUCUGCa- -3'
miRNA:   3'- -CGCCGGCAGGG-----------GGCGa-UGG-AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 134090 0.71 0.398547
Target:  5'- uCGGauccgCGUCCCCgGC-GCCUaCCGCUCg -3'
miRNA:   3'- cGCCg----GCAGGGGgCGaUGGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 191481 0.73 0.31842
Target:  5'- aGCGGCCGUCUUCuCGUacagACC-CUGCUCa -3'
miRNA:   3'- -CGCCGGCAGGGG-GCGa---UGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 8472 0.73 0.31842
Target:  5'- gGCGGCCGUCggacagaCCCGCcGCCUCCccGCcCg -3'
miRNA:   3'- -CGCCGGCAGg------GGGCGaUGGAGG--CGaG- -5'
8959 3' -63.6 NC_002512.2 + 1079 0.73 0.31842
Target:  5'- gGCGGCCgGUCuCCCCGUc-CCUCC-CUCu -3'
miRNA:   3'- -CGCCGG-CAG-GGGGCGauGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 29050 0.75 0.234801
Target:  5'- aCGcGCCGcgCCCCCGCUgACCUUCGCg- -3'
miRNA:   3'- cGC-CGGCa-GGGGGCGA-UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 61769 0.75 0.251019
Target:  5'- cGCGGCCGggCCCCUcucCUACC-CUGCUCc -3'
miRNA:   3'- -CGCCGGCa-GGGGGc--GAUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 12788 0.74 0.256627
Target:  5'- gGCGGCg--CCCCCGCUGCCcCUGCg- -3'
miRNA:   3'- -CGCCGgcaGGGGGCGAUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 147455 0.74 0.280087
Target:  5'- gGCGGCCGUCUgUCGCUGCugguCUUCGCg- -3'
miRNA:   3'- -CGCCGGCAGGgGGCGAUG----GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 57233 0.73 0.292442
Target:  5'- cGCGGgCGUCCCcgcaggCCGCgUACCgCCGUUCg -3'
miRNA:   3'- -CGCCgGCAGGG------GGCG-AUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 128029 0.73 0.292442
Target:  5'- uGCGGCCGggUCgCUCGCUGCCUCUGg-- -3'
miRNA:   3'- -CGCCGGC--AGgGGGCGAUGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 27360 0.73 0.298778
Target:  5'- -gGGUCGUccgCCCCCGCcgccGCCUCCGcCUCc -3'
miRNA:   3'- cgCCGGCA---GGGGGCGa---UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 101609 0.73 0.309135
Target:  5'- gGCGGCCGUCggCCCgGC-GCCgggacgcgagucgCCGCUCg -3'
miRNA:   3'- -CGCCGGCAG--GGGgCGaUGGa------------GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.